BAC Information

Click to search

BAC

Clone NameMSMg01-261J01
Chromosome3 (Build37)
Map Location 157,247,028 - 157,247,353
singlet/doubletsinglet
Overlap genePtger3
Upstream geneNegr1, LOC100041152, LOC668853, LOC546818, Zranb2
Downstream geneLOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261J01.T7 (MSMg01no261_j01.b1)MSMg01-261J01.TJ (MSMg01no261_j01.g1)
ACCAG403914AG403915
length723781
length of high quality
(start - end)
624 (81 - 704)332 (69 - 400)
definitionCHROMAT_FILE: MSMg01no261_j01.b1 PHD_FILE: MSMg01no261_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:59 2005CHROMAT_FILE: MSMg01no261_j01.g1 PHD_FILE: MSMg01no261_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTAAACCTGTTCCCCAGCTTCACTGAAGTAGCTGGATAT
AAAATTAACTCAAACAAATCAGTGGCCTTTCTCTACACAAAGGATAAACA
GGCTGAGTGAGAAATTAGGGAAACAACACCCTTCATAATAGTCACAAATA
ATATAAAATACCTTGGTGTGACTCTAACTAAGGAAGTGAAAGATCAGTTT
GATAAGAACTTCAAGTCTCTAAGGAAAGAAATCAAAGAAGATCTCAGAAG
ATGGAAAGATCTCCCATGCTCATGAATTGGCAGGATCAATATAGTCAAAA
TGGCTATCTTGTCTAAAGCAATCTATAGATTCAATGCAATCCCCATCAAA
ATTCCAACTCAATTCTTCAACGAATTAGAAAGGGAAATTTGCAAATTCAT
CTGGAATAACAAAAATTCCTAGGATGGCAAAAACTCTTCTCAATGATAAA
AGAACCTCTGGTGGAATCACCATGCCTGACCTCAAGCTGTACTACAGAGC
AATTGTGATAAAAAACTGTATGGTACTGGTACAGCAACAAACAGGTAGAC
CAATGGAATAGAATTGAAGACCCATAAATGAACCCACACACCTATGGTCA
CTTGATCTTTGACAAGAGAGTTAAAACCATCCAGTGGGAAAAAGACAGCA
TTTTCAACAAATGGAGCTGGCAN
NTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGCCCAATTCACTATAAGTTGTAATGTTGAT
ATTTTCAGGAATGGTTTTTGCAGAACCAGGGAAGATGGACATATCTTAGC
TCATTCAAGCAGAATTTGATGCTTGTCTAAAGAGACACATTGAAGGAGTT
TCTCAGTTAAAATACCGGAAGTACAAGAACACCAGCCTAATGCAGTACTA
CAGGGTAGGAATAGAATTCAAGCAGCAAATGTGAGCTGTATTATACATTT
CAGCTTTCCATTAGACTCATTTCCAAATAATAAAAATAAGCTCAGATTTT
ATCTAAAATTATTTAATTTTATTTCATTTTATTCGATGTACCTGAATGCT
ACGTTCAGCATGCAATAGATTTTAAAATGTATTGAAATGTTTTACATTCC
GCTTTTTGGAATCCTGTCTACGCAAACGCGCCTAGATCCGGAATGACCCA
TTAATAAACCTCAACACAACCCTCTAAGTGCCCTGGTTGTGGTTAGTTAT
GCCTTGGACTTCTAGTACTTCAAGAGGCCAAAGGCAGGCCAGGCCTCTGC
TGAGATTATAAACCCAGTTCCCCGTCTACCCTATGGTAAAACAAGTTCCA
AGGATACCCCTTTGGATTGCATTATTTTAGCACCTCTTGCTCCTATATAA
CTCTTTCATGATTGATACACCCCCTCTCTTGGCTCTGGAACAACCCTGCC
CCCCTCCAAAGTTTTTACATACACTGTTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_j01.g1 MSMg01no261_j01.g1 CHROMAT_FILE:
MSMg01no261_j01.g1 PHD_FILE: MSMg01no261_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:59 2005
         (332 letters)



>mm_chr3_157246877_157247608
          Length = 732

 Score =  592 bits (306), Expect = e-173
 Identities = 321/326 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   aattcactataagttgtaatgttgatattttcaggaatggtttttgcagaaccagggaag 66
           ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 477 aattcactataagttgtaatgttgatattttcaggaatggttttttcaggaccagggaag 418

                                                                       
Query: 67  atggacatatcttagctcattcaagcagaatttgatgcttgtctaaagagacacattgaa 126
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 atggacatatcttagcacattcaagcagaatttgatgcttgtctaaagagacacattgaa 358

                                                                       
Query: 127 ggagtttctcagttaaaataccggaagtacaagaacaccagcctaatgcagtactacagg 186
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ggagtttttcagttaaaataccggaagtacaagaacaccagcctaatgcagtactacagg 298

                                                                       
Query: 187 gtaggaatagaattcaagcagcaaatgtgagctgtattatacatttcagctttccattag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gtaggaatagaattcaagcagcaaatgtgagctgtattatacatttcagctttccattag 238

                                                                       
Query: 247 actcatttccaaataataaaaataagctcagattttatctaaaattatttaattttattt 306
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 237 actcatttccaaataataaaaataagctcagattttatctaaaaatatttaattttattt 178

                                     
Query: 307 cattttattcgatgtacctgaatgct 332
           ||||||||||||||||||||||||||
Sbjct: 177 cattttattcgatgtacctgaatgct 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)