Query= MSMg01no262_a24.b1 MSMg01no262_a24.b1 CHROMAT_FILE:
MSMg01no262_a24.b1 PHD_FILE: MSMg01no262_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:36 2005
(367 letters)
>mm_chr3_91949865_91950631
Length = 767
Score = 688 bits (356), Expect = 0.0
Identities = 362/364 (99%), Gaps = 2/364 (0%)
Strand = Plus / Plus
Query: 5 gaattcaggtcctctctc-tgcttgtaaaatggacactctaccagttgatctatttcccc 63
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggtcctc-ctcatgcttgtaaaatggacactctaccagttgatctatttcccc 263
Query: 64 agttccgtgtctccatttctatttgcttctcatttccgactttgccctgaagtgcacctt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agttccgtgtctccatttctatttgcttctcatttccgactttgccctgaagtgcacctt 323
Query: 124 ttcagttctatattttccttgaacctttctccacgttatcattttctgtcttccagctaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcagttctatattttccttgaacctttctccacgttatcattttctgtcttccagctaa 383
Query: 184 atatcttggtgatgttcccagcaagattcagtatttcaatgttaatcttaaaacataatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atatcttggtgatgttcccagcaagattcagtatttcaatgttaatcttaaaacataatt 443
Query: 244 tctggtttgagtaaggacagttcatataaatgtcattaataaacaatagtaatttagcga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctggtttgagtaaggacagttcatataaatgtcattaataaacaatagtaatttagcga 503
Query: 304 tgaaagctaagatggctgggagagatgtctcagtaaaagtgcttgttttacaaagtatga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgaaagctaagatggctgggagagatgtctcagtaaaagtgcttgttttacaaagtatga 563
Query: 364 agat 367
||||
Sbjct: 564 agat 567
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space: 271364
Effective search space used: 271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_a24.g1 MSMg01no262_a24.g1 CHROMAT_FILE:
MSMg01no262_a24.g1 PHD_FILE: MSMg01no262_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:36 2005
(636 letters)
>mm_chr3_92095863_92096897
Length = 1035
Score = 1154 bits (597), Expect = 0.0
Identities = 627/637 (98%), Gaps = 5/637 (0%)
Strand = Plus / Minus
Query: 1 atatgtggaggacaatcaataacagtctaatttgatgaagttcccactcaggagaaatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 atatgtggaggacaatcaataacagtctaatttgatgaagttcccactcaggagaaatgg 775
Query: 61 atacatagctgattctaaaacttagccagtacctgtggcttatggggtaatttttctaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 atacatagctgattctaaaacttagccagtacctgtggcttatggggtaatttttctaag 715
Query: 121 gaaaacagattgtggaaagctcaggcccagtggatatatacacaccccaacttctgcatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 gaaaacagattgtggaaagctcaggcccagtggatatatacacaccccaacttctgcatc 655
Query: 181 tgtaactcagaaaacatttttggcaagaaccagaatattggagagggggtctaaaactgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tgtaactcagaaaacatttttggcaagaaccagaatattggagagggggtctaaaactgt 595
Query: 241 ctctcgtggaaatggatgcatacacaagccctgaacaacagcagtatcaaagacaacaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctctcgtggaaatggatgcatacacaagccctgaacaacagcagtatcaaagacaacaaa 535
Query: 301 gaaacaaaaatcacacagggttctaactttagacaaagaagtataggaaagtaatgactc 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 534 gaaacaaaaatcacacagggttctacctttagacaaagaagtataggaaagtaatgactc 475
Query: 361 tagcaaaatggcattggtcccttttttggatgaacatggtcagccttaaaactagtggac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tagcaaaatggcattggtcccttttttggatgaacatggtcagccttaaaactagtggac 415
Query: 421 tcaggaatttgtatttatatatttttacgcacatgtgtgcaacacaaaataacagtaaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 414 tcaggaatttgtatttatatatttttacgcacatgtgtgcaacacaaaataacagcaaga 355
Query: 481 aaaggaggctagcaacattaagtgt-ggggatcacgtgggaagt-attcagggaaaccta 538
|||||||| ||||||||| |||||| ||||| |||||||||||| || ||||| ||||||
Sbjct: 354 aaaggaggttagcaacat-aagtgttgggga-cacgtgggaagtgat-caggggaaccta 298
Query: 539 gtcagaagagactggaaggaataaagatggggctaaagttatgtaaggttttattttttt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gtcagaagagactggaaggaataaagatggggctaaagttatgtaaggttttattttttt 238
Query: 599 caatcaaaagcttaatttaaattttcaaatataattt 635
||||||||||||||||||||||||| |||||||||||
Sbjct: 237 caatcaaaagcttaatttaaattttaaaatataattt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1035
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1025
Effective search space: 641650
Effective search space used: 641650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
