BAC Information

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BAC

Clone NameMSMg01-262E10
Chromosome3 (Build37)
Map Location 74,816,687 - 74,817,221
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC619764, LOC667434, LOC100041551, EG667459
Downstream geneBC050789, Serpini2, Wdr49, Pdcd10, Serpini1, Golph4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262E10.T7 (MSMg01no262_e10.b1)MSMg01-262E10.TJ (MSMg01no262_e10.g1)
ACCAG404424AG404425
length739739
length of high quality
(start - end)
273 (39 - 311)535 (72 - 606)
definitionCHROMAT_FILE: MSMg01no262_e10.b1 PHD_FILE: MSMg01no262_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:53 2005CHROMAT_FILE: MSMg01no262_e10.g1 PHD_FILE: MSMg01no262_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXTACAAAAGAGGATCCGCGGAATT
CTCCTATACCGGGACATTAAGTCTTGACAGGACCAAGGACAGCTCCTCTC
ATTGATGCTGGACAAGGCCATCCACAGCTACATATGTGGCTGGAGCCATG
GGTTTCTCCATGTGTATTCCTTGGTTATTGTTCTTACTACAAGGTTGCAA
ACCCCTTCAGCTCCCCCAGTCCTTTCTCCAACTCCTCCATTGGGGTCCCT
GTGCTCAATCCAATGGCTGGCTGTGAACATCTGCCTCTGTATTTGTCAGC
TTCTAGCAGAGCCTCTCAGGAGACAGCTATATCAGGCTCCTGTCAGCAAG
CACTTCATGGCATCCACAATAATGCCTGGGTTTGGTGACTATATATGGGA
TGGATCCCCCTATTTGGCAGTCTCTGGACGGGCTTTCCTTTAGTCCCTGC
TCCACACTTTGTCTCTGTATTTGCTCCTGTGATTATTCTGTTCCCATTTC
TAAGAATAACTGAATCATCCACACTTAGGTCTTCCTTCTTCTCGAGTTTC
ATGTGATCTGTGAATTGTATTTGCGCAGCCTGATATTCTGTCCTAATAGC
CTCTTCATCTTGTTTGTATACCTTATATGTTCTTTCGTGACCGGCTTACC
TCATGCCTGCACGACTTTTTCTAGTTCTATTACTTATTTATATTCATCTT
CATGATGCCATTTGCATTTCAAACCTTGACTACTATTAC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTGAGGGGAAGGTTAGACTCAAGTGGTG
AGAACAAATGTCTAAATTGTGTGGGTCAAAAAGAACCATACAATGAGAAA
ATAGTGAGTGGATATACCTATTGAAGAATTTTACTAGTTTATTGTAATAG
AAAAGAAATAAAGATAATATGATCTATATTGCAATGGTGGCTGATAAGGC
AGTATTCTCTTCCTTGTCCAGGAAAGACATTTGACAATATACAGTAAGCA
TTATTCATACATAATCACCTTGCTTCTGTGATGGATAACCCAAAGCATAG
GTCTTTTAAAATATGTAATTTTCAACCTGAGTTTTAACCTGCTATAGTTG
AGTCATAGAGAAAATAGTACACACGGCATTTTTGTTGACTGGTAGTGCAG
AAAAGAAAGCAACAATGTTTTTAGGCATCATTTTCATAACAGAAGGAGTT
TCATTACTATATTTCTGAATAAAAAGTACTATCTGTTGAAGACTTTGTCA
TTAATATGGCTGTAGCCATTTATTTTTGTTAATAAAAAAGAAAAGAAAAT
TTCATTCATTCTGAAGCTTTATAGAATCAGATGTGTTAATTCTTGAAAAG
CCACAAAATGTGTGTGTGTGCGCGTGTGTGTGTCTCCTTCCTCTTTTTTT
TTTTTTCCCTCTTTTTTTACCCTCTCTTCCCCCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_e10.g1 MSMg01no262_e10.g1 CHROMAT_FILE:
MSMg01no262_e10.g1 PHD_FILE: MSMg01no262_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:53 2005
         (535 letters)



>mm_chr3_74816487_74817421
          Length = 935

 Score = 1027 bits (531), Expect = 0.0
 Identities = 534/535 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgaggggaaggttagactcaagtggtgagaacaaatgtctaaattgtgtgggtcaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgaggggaaggttagactcaagtggtgagaacaaatgtctaaattgtgtgggtcaaaa 260

                                                                       
Query: 61  agaaccatacaatgagaaaatagtgagtggatatacctattgaagaattttactagttta 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 agaaccatacaatgagaaaatagtgagtggatatacctatagaagaattttactagttta 320

                                                                       
Query: 121 ttgtaatagaaaagaaataaagataatatgatctatattgcaatggtggctgataaggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtaatagaaaagaaataaagataatatgatctatattgcaatggtggctgataaggca 380

                                                                       
Query: 181 gtattctcttccttgtccaggaaagacatttgacaatatacagtaagcattattcataca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtattctcttccttgtccaggaaagacatttgacaatatacagtaagcattattcataca 440

                                                                       
Query: 241 taatcaccttgcttctgtgatggataacccaaagcataggtcttttaaaatatgtaattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatcaccttgcttctgtgatggataacccaaagcataggtcttttaaaatatgtaattt 500

                                                                       
Query: 301 tcaacctgagttttaacctgctatagttgagtcatagagaaaatagtacacacggcattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaacctgagttttaacctgctatagttgagtcatagagaaaatagtacacacggcattt 560

                                                                       
Query: 361 ttgttgactggtagtgcagaaaagaaagcaacaatgtttttaggcatcattttcataaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgttgactggtagtgcagaaaagaaagcaacaatgtttttaggcatcattttcataaca 620

                                                                       
Query: 421 gaaggagtttcattactatatttctgaataaaaagtactatctgttgaagactttgtcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaggagtttcattactatatttctgaataaaaagtactatctgttgaagactttgtcat 680

                                                                  
Query: 481 taatatggctgtagccatttatttttgttaataaaaaagaaaagaaaatttcatt 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taatatggctgtagccatttatttttgttaataaaaaagaaaagaaaatttcatt 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)