BAC Information

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BAC

Clone NameMSMg01-262H16
Chromosome3 (Build37)
Map Location 12,593,778 - 12,594,020
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667999, EG621965
Downstream geneLOC100039798, EG668033, LOC668037, LOC100039823, LOC100039861, 0710005M24Rik, LOC100041679
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262H16.T7 (MSMg01no262_h16.b1)MSMg01-262H16.TJ (MSMg01no262_h16.g1)
ACCAG404568AG404569
length731729
length of high quality
(start - end)
243 (385 - 627)586 (71 - 656)
definitionCHROMAT_FILE: MSMg01no262_h16.b1 PHD_FILE: MSMg01no262_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:09 2005CHROMAT_FILE: MSMg01no262_h16.g1 PHD_FILE: MSMg01no262_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGNAAATCCGCGGA
ATTCCATCTAATTTGCAGACATGAATCTCCTGTGGATTTTTATCATGCTA
TTAATATGTAAACTTATTAAGTCTCAGTTACTCAGGTAAAATTAGCTCAT
CACCATCACTTTCTATGTACTTTAACAAATTGTTCACTGTATCCAGAAAT
AGTACTGGATAAAAATTAAAAACTGCTTCTTAGAAATATAATTTGCCTCT
GAAAGGAATTTGACTGGTGCATAATTTATGTCACATAGGAAATCCTTGAC
ACAAATGATGAGTAAGGCTCTTTTGTATGAAAGGAGACTTAAGTTTGTTT
ACCATTCTCTTTCATCCTTAACTCACACCCAGCCAGAAGCTGAATGTTAG
AAAGAAAACAGATATAAACAATTAAAAACAATTCAGAAATCCATATTCTT
AACTAAAAGGTTGTGGTGGAAAATTGAAAATGCTTATGTTTCTTCGTGTA
AAGGTTCAATATCCATGTGAATAAATTTTTTCTTGAGAGGAATATTGCCA
TGGTTAACAATAACCACAACTTGCTATTCAACGCAGTACTTCAATGTGAT
TGTATTGTTATTTTGAAATATGTTTCTGTCTTTGCACATATTTCTTTGGT
TTTCATTATGAAAAAACAAACATGGTTTGAATGGCCTTGTTACATGGCCA
TTTATATCGAGCACGCGCATGGCCTGTTGAT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGGAAAAATGTTCAACATCCTTAATCTTCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTGTGGAAATCCGT
CTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCTCTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCATATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGCCAAATGGATGGACCTGGAGGACATCATCCTGAGTGAGGT
AACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTATCCCAAAACCTAGGATACCCAAGATATAACATTACATTTCCTAAAC
ACTTGAGACTCATGAAAAATGATAACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_h16.b1 MSMg01no262_h16.b1 CHROMAT_FILE:
MSMg01no262_h16.b1 PHD_FILE: MSMg01no262_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:09 2005
         (243 letters)



>mm_chr3_12593578_12594220
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagctgaatgttagaaagaaaacagatataaacaattaaaaacaattcagaaatccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agaagctgaatgttagaaagaaaacagatataaacaattaaaaacaattcagaaatccat 384

                                                                       
Query: 61  attcttaactaaaaggttgtggtggaaaattgaaaatgcttatgtttcttcgtgtaaagg 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 attcttaactaaaaggttgtggtagaaaattgaaaatgcttatgtttcttcgtgtaaagg 324

                                                                       
Query: 121 ttcaatatccatgtgaataaattttttcttgagaggaatattgccatggttaacaataac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttcaatatccatgtgaataaattttttcttgagaggaatattgccatggttaacaataac 264

                                                                       
Query: 181 cacaacttgctattcaacgcagtacttcaatgtgattgtattgttattttgaaatatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cacaacttgctattcaacgcagtacttcaatgtgattgtattgttattttgaaatatgtt 204

              
Query: 241 tct 243
           |||
Sbjct: 203 tct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)