Query= MSMg01no262_l13.b1 MSMg01no262_l13.b1 CHROMAT_FILE:
MSMg01no262_l13.b1 PHD_FILE: MSMg01no262_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:26 2005
(624 letters)
>mm_chr3_84805150_84806173
Length = 1024
Score = 1178 bits (609), Expect = 0.0
Identities = 618/623 (99%), Gaps = 4/623 (0%)
Strand = Plus / Plus
Query: 4 aaatatttctccttcaaagaagtaggttctgttagttggccgctctgaggcaattgttta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aaatatttctccttcaaagaagtaggttctgttagttggccgctctgaggcaattgttta 263
Query: 64 ccccaaacaaagggttattcttgttctgctgtcttgggcaagtggggaggtactctatga 123
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 264 ccccaaacaaagggttattcttgttctgctgtcttgggcaagtgggaaggtactctatga 323
Query: 124 taacaaggtgggacacggccaaacaactcatttcatgagccacaaagccaagaagaaaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taacaaggtgggacacggccaaacaactcatttcatgagccacaaagccaagaagaaaga 383
Query: 184 agaggacctgaggtcccacagtcctgttcaaggccacaccccaatgacctaaagacctct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaggacctgaggtcccacagtcctgttcaaggccacaccccaatgacctaaagacctct 443
Query: 244 cactagtccctacctcctgaggtttctaccacctcccagaagcaagccttttacaagtct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cactagtccctacctcctgaggtttctaccacctcccagaagcaagccttttacaagtct 503
Query: 304 ttggagaacattctagatctaaattctagctgtgacattgcagcttgcctctgtgggtgt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttggagaacattctagatctaaattctagctgtgacattgcagcttgcctctgtgggtgt 563
Query: 364 tcatactaatatgcttcttgagtcaaatatgaaaaaaaaaaa----gaggagaaaacaag 419
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 564 tcatactaatatgcttcttgagtcaaatatgaaaaaaaaaaaaaaagaggagaaaacaag 623
Query: 420 agaaaccaggaacttcatgaataaagaaacctaatcccatctcaacccagtggacaaggc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agaaaccaggaacttcatgaataaagaaacctaatcccatctcaacccagtggacaaggc 683
Query: 480 cgccatccacagcggaaagggattttgctgaaatgtgcccttgacatatgactgaaatgt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cgccatccacagcggaaagggattttgctgaaatgtgcccttgacatatgactgaaatgt 743
Query: 540 catttatcattttgatatccctccaacactgcacaacaccagtctaacggtgagaagcac 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 catttatcattttgatatccctccaacactgcacaacaccagtctaacggtgagaagcac 803
Query: 600 ttcaggtacacctaactggggtg 622
|||||||||||||||||||||||
Sbjct: 804 ttcaggtacacctaactggggtg 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_l13.g1 MSMg01no262_l13.g1 CHROMAT_FILE:
MSMg01no262_l13.g1 PHD_FILE: MSMg01no262_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:26 2005
(343 letters)
>mm_chr3_84972766_84973505
Length = 740
Score = 632 bits (327), Expect = 0.0
Identities = 338/343 (98%), Gaps = 3/343 (0%)
Strand = Plus / Minus
Query: 1 caggacagccagggctacacagagaacccctgtctcaaacagtcaaacaaacaaacaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 caggacagccagggctacacagagaacccctgtctcaaacagtcaaacaaacaaacaaac 546
Query: 61 aaacagaagcaaaatggttttgttgattcatacaaggaacccaaattctagtaactgatg 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aaacagaagcaaaatggtttcgttgattcatacaaggaacccaaattctagtaactgatg 486
Query: 121 agcatagcatggcatgtcgtggcgttctttctccctatattcctgttggcagagcctggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agcatagcatggcatgtcgtggcgttctttctccctatattcctgttggcagagcctggg 426
Query: 181 gtttaaggtggttttctacccgagtgtaggaacacatcatggactggaacgtgaaacacc 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 425 gtttaaggtggttttctacccgagtgtaggaaca---catggactggaacgtgaaacacc 369
Query: 241 tggagacacttgcttaaagaacttctgggaaaattgctgttaaaaagaaatacatttggc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tggagacacttgcttaaagaacttctgggaaaattgctgttaaaaagaaatacatttggg 309
Query: 301 tttctttcattgactgttcccaggcttttacaggatactggga 343
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tttctttcattgactgttcccaggcttttacaggatactggga 266
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 740
Length adjustment: 9
Effective length of query: 334
Effective length of database: 731
Effective search space: 244154
Effective search space used: 244154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
