BAC Information

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BAC

Clone NameMSMg01-263D18
Chromosome3 (Build37)
Map Location 149,968,194 - 149,968,542
singlet/doubletsinglet
Overlap genenone
Upstream geneEG381483, LOC100040620, LOC100040633
Downstream geneLOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263D18.T7 (MSMg01no263_d18.b1)MSMg01-263D18.TJ (MSMg01no263_d18.g1)
ACCAG405115AG405116
length731762
length of high quality
(start - end)		344 (385 - 728)519 (77 - 595)
definitionCHROMAT_FILE: MSMg01no263_d18.b1 PHD_FILE: MSMg01no263_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:06 2005CHROMAT_FILE: MSMg01no263_d18.g1 PHD_FILE: MSMg01no263_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTGCATGCTACATTAACGGAGGCATTTGAAATGTGCAGAAGA
AGTAGTAAAATAAAGACTATGAAACTGGATGGTTGTTGATGGGTGCTCTT
GATATATTGAAAAAAGCAATGTGAGGTTTTGGTTGATCAATAATCCATTT
ATACTACACATAAGGGCCAGAAACAGTCCTTAACTGTTTACAAAGCAAGA
CCTTTTTATATTCTTCATTGAAAAGGAGAAAAGAGAATATTATATCCAAA
CCTTGATGACCTCAACAGTAGAATTTGATTGAGTTGAATTCTCAATCTTG
TCTTGACTTTCTGTGTTTAGAATGACCACTTTGATTGGCAAGGTACAATA
CTTAAATTAGAAATGGAAAATGCTGTTTGGATAGGAAGTGTTAGCAACTT
AAGATCTGGAAAACGCAATCTCCACACGAGTTTGCTGATCTATCCACATG
ACAAGGTATGGACACAGAATCCACAAACTCAGACTTGGACTTCATTCTAG
CACTGTGAAAAATATGTCCTTCATGTGTTACAAACTACCCAGTTTTAGTT
ATTTTATGATGGCAATCCCAAAGGAATAATGGTATTCACTGGCCCAATTT
TAATGGCCAGTGTTCAAAGTCAGAAGAGTCAGCTAAGGACATGGTAAATA
GTGAACTGAAGAAGTGGAAGGTCTGAGTAAC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGTTAGTATGAACAATTCAGT
AAGAAGCTGAGAGACAGAGGCTGGTGAGGCGACTCAGTGGGTAAGAGCAC
CTGACTGCTCTTCCAAAGGTCTGGAGTTCAAATCCCAGCAACCACATGGT
GACTTACAACCATCTGTAAACAGATCTGACTCCCTCTTCTGGAGTGTCTG
AAGACAGCTTCAGTGTACTTACATATAATAAATAAATAAAAATAAAAATA
AATTTTAAAAAAGAAGCTGAGAGACATGAGTTTCAATCACTCAGCTTGGA
GAGGAGGTTTGTGTCAGATCAGCTGAATTGAACGAGCCAGACAGAGTTCA
GAAAGGGTGAGTTTATTAGGCACCAAGCCTCCAAGGCAACAAATACATCT
GGTGAATAATTGTCACTTTTACAATAAACAGCATACCACTTTATGACTTA
CTAGCCAGTCATGGTGATGCTTACTTCTAGTCCTCTGGACACAGAGTTAG
GACAACTGAGTTTAAGGCAACCCTGTTGTACATAGCAGGTTGCAAAATAC
CTAGGTATGCATAGCAAGAGTCTACCTAAAAATATTAAATGAATAATGTG
CTGAACTCTTCCCCATTTTTATCATTAAAGGCATAGATGGGTTTAATTCT
ATCCTGCTTTGAATAAAATTTTTTTCGTTGCTTCTTCCCCTATATTTCTT
CGCACTATTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_d18.b1 MSMg01no263_d18.b1 CHROMAT_FILE:
MSMg01no263_d18.b1 PHD_FILE: MSMg01no263_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:06 2005
         (344 letters)



>mm_chr3_149968194_149968937
          Length = 744

 Score =  408 bits (211), Expect = e-118
 Identities = 281/349 (80%), Gaps = 68/349 (19%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggcaaggtacaatacttaaattagaaatggaaaatgctgtttggataggaagtgttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttggcaaggtacaatacttaaattagaaatggaaaatgctgtttggataggaagtgttag 290

                                                                       
Query: 61  caacttaagatctggaaaacgcaatctccacacgagtttgctgatctatccacatgacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 caacttaagatctggaaaacgcaatctccacacgagtttgctgatctatccacatgacaa 230

                                                                       
Query: 121 ggtatggacacagaatccacaaactcaga------------------------------- 149
           |||||||||||||||||||||||||||||                               
Sbjct: 229 ggtatggacacagaatccacaaactcagaggatgaaacagccaccatgaatcatttttta 170

                                                                       
Query: 150 -------------------------------------cttggacttcattctagcactgt 172
                                                |||||||||||||||||||||||
Sbjct: 169 aaagcaaaggttacctcaaagataagaggaccttaaccttggacttcattctagcactgt 110

                                                                       
Query: 173 gaaaaatatgtccttcatgtgttacaaactacccagttttagttattttatgatggcaat 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 gaaaaatatgtccttcatgtgttacaaactacccagttttagttattttatgatggcaat 50

                                                            
Query: 233 cccaaaggaataatggtattcactggcccaattttaatggccagtgttc 281
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  cccaaaggaataatggtattcactggcccaattttaatggccagtgttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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