BAC Information

Click to search

BAC

Clone NameMSMg01-263J09
Chromosome3 (Build37)
Map Location 131,382,867 - 131,383,150
singlet/doubletsinglet
Overlap genenone
Upstream gene2310008M10Rik, Rpl34, LOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
Downstream geneOlfr375-ps1, Dkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263J09.T7 (MSMg01no263_j09.b1)MSMg01-263J09.TJ (MSMg01no263_j09.g1)
ACCAG405365AG405366
length734788
length of high quality
(start - end)
327 (53 - 379)284 (73 - 356)
definitionCHROMAT_FILE: MSMg01no263_j09.b1 PHD_FILE: MSMg01no263_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:33 2005CHROMAT_FILE: MSMg01no263_j09.g1 PHD_FILE: MSMg01no263_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTCAGCTCTGAGCCCCATCTTTTAAGGGGGTTAT
TTGATTTTCTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATT
AGTCCCCTATCTGATTTAAGATAGATAAAGATCCTTTCCCAATCTGTTGG
TGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGAG
GTTTCATGAGGTCCCATTTGTCAATCCTTGATCTTACAGCACAAGCCATT
GCTGTTCTATTCAGGATTTTTTTTCCCTGTGCCCATATCTTCGAGACTTT
TACCCACTTTCTCCTCTATTTTTTTCCCCCCCCCCGCTTTTATGTGAAGT
TCCTTGATCCACTTAGATTTGACCCCAACACAAGAAAAGAGGAATGGGTC
GATTCACATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGT
TGAAAATGCTGTCTTTCTTCCACTGGATGTTTTAGCTCCCTTGTCGAAGA
TCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGCTCTTCAATTCTATTC
CATTGGTCTACTAGTCTGTCACTATACCCCTATCTTTCAGCTTCTTTTTA
ATAAATGTTCTGTATTAATTCTCTCATCCTATTCCCTGTTGTCTCCCCCT
CGCTATTTTCCCTCCTTTTAATTTCCTTTTTGTC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGGCTGTTTCCAAGCACGGAGGGTCAC
ACTGTAAAGACTCGCGTGACGCCATTAGGGATCTATAGAGAAGTGAAGCT
CACATTTGCCAGCTGACTATCCTTGGCTCTGTGCCAGGAAAACCACTTAT
TATTACTTTGTGCCTCACAGTGCTAGGGTAAAGCTTTCCATATAGCTTTA
GCATTTGCCTGTGCCATTGGATTCGCCAACTCCCCCTCTACTGCTTAGTT
TTTCTTGTTAGCTTGACCTGATCTGAGGTTTCACCTGCTACACTGTTCTT
ATAGTGTTTTTTTTCAGACCCCCCCGCCCACAGGGAGCCTTTATTGAGAA
AATGCCTCTCGCCCCACTGGCCTGAAAAAAAGTCTCTGGGACATTTTCTT
GACTGACCAATGATGTGCCAGTATCCCAGTCCACTGCAGGGTATTGTTAG
CTCCTGTTCTGCCGCACCCGTTATCTTTGATTTATTACCTTCAGTCCCCC
TCCTGCTATTTTCTTTTTATTTTGGCCCCCCTCTATATCTCCCCGCCTTC
TTCACTCTGTTTCTTACCCATCTCTTCACCCGACCTTCACGCTTATGAGC
TCCCCGCTTTTGTTTTCTCCTTTGTCGACTTCTTTTCTCTCCGTTTGTCT
TTTTTCCTCCTATTCTTCTCTTCCCCTACTATCTCTTTTTGTTTCATTTT
CTTTCTTTTTCCAGCTTACCTTCCCACCCTCTTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_j09.g1 MSMg01no263_j09.g1 CHROMAT_FILE:
MSMg01no263_j09.g1 PHD_FILE: MSMg01no263_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:33 2005
         (284 letters)



>mm_chr3_131382667_131383350
          Length = 684

 Score =  503 bits (260), Expect = e-147
 Identities = 278/284 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctgtttccaagcacggagggtcacactgtaaagactcgcgtgacgccattagggat 60
           |||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||
Sbjct: 201 atggctgtttccaagcacggagggtcacactgtaaagactcgagtgacgatattagggat 260

                                                                       
Query: 61  ctatagagaagtgaagctcacatttgccagctgactatccttggctctgtgccaggaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatagagaagtgaagctcacatttgccagctgactatccttggctctgtgccaggaaaa 320

                                                                       
Query: 121 ccacttattattactttgtgcctcacagtgctagggtaaagctttccatatagctttagc 180
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacttattattactttgcacctcacagtgctagggtaaagctttccatatagctttagc 380

                                                                       
Query: 181 atttgcctgtgccattggattcgccaactccccctctactgcttagtttttcttgttagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 atttgcctgtgccattggattcgccaactccccctctactgcttagtttttattgttagc 440

                                                       
Query: 241 ttgacctgatctgaggtttcacctgctacactgttcttatagtg 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgacctgatctgaggtttcacctgctacactgttcttatagtg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)