BAC Information

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BAC

Clone NameMSMg01-264B07
Chromosome3 (Build37)
Map Location 154,031,459 - 154,031,766
singlet/doubletsinglet
Overlap genenone
Upstream geneSt6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980, Lhx8
Downstream geneLOC100040810, LOC100040829, Tyw3, Cryz, BC007180, Tnni3k, Fpgt, Lrrc44, EG383956
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264B07.T7 (MSMg01no264_b07.b1)MSMg01-264B07.TJ (MSMg01no264_b07.g1)
ACCAG405727AG405728
length730891
length of high quality
(start - end)
313 (46 - 358)---
definitionCHROMAT_FILE: MSMg01no264_b07.b1 PHD_FILE: MSMg01no264_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:10 2005CHROMAT_FILE: MSMg01no264_b07.g1 PHD_FILE: MSMg01no264_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAAATATTTATAAAACACTTCTGAAGTTAAGGGTTATAAACCTT
TAGGTCTGAAACTGTAAGAGTTAAGCTAATTTGTCAACTCTTTGGGTTCC
TTCTGTTGAAGTGTTTGTAAATCATGGGTGTTTATCAATTAGTCTAAGTT
AACGTCACTTCTTCTGGCGTGAATGGTAGAGTTAACATGGCATCCAGTGC
CTTCTCATTAAAGTTCTGGCAACAATTGGACAGTATTGAGGACCATGAGG
TATCATACAGAGAATGCTTCTACACACTGCCTGTCAATTATCTGAGGATG
CTGTTGATATATATTTCAGCGCCCACCCTCATTTGTTGTTCTGCAGAGAA
CCCGAGACTCTGTGAATCGACCCGAGTCTGCAGAAGTGGCTAGAACCCAC
CAGCACACCACCAGAAATTCTTTTTGGTGCGTTTCTATCTATGGAGCTCA
ACTATGCAATGTAAGGCAGACCAATACATGCATGCCATTAGTGAATGTCT
TACTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAACTCTT
TTATTTTTAAGACTTATTTTATTTATTTCATGTATATGAGTACACTGTAG
CTATCTTCAGACACACCAGAAAAGGGCAACAGACCTCATTACAAATGATT
GTGAGCCTCCATGTGGCTGCTGGGAATTGN
TTTTTTTTTTTTTTCTTTTTTTTCTCCCCCCCTTCCATCATCGTAAAATT
TTTTATTATTCCACCCTTTCTTCTATCCTCTTCCCCTCCCTCCCCCCTCT
CTTCTCCCTTTTTTTTATTTTTCTCTTCCTTTTTCTCTTTCTATTTTTCT
AACCTTCTCTCCCTCTCCTTCCTTCTTTTTTTTCTCTTCTCTTCCCTTCT
CTTTTTTCTTCCCTTCTATTCCCCCTTTAACCTCCTTTCTCTCCACTCTC
CTCCCCTCTTCTCTCTTCTTCTTACATCTTTTATTTTCTCTTCTTCCCCC
TTTTTTCTCTTTTCTTTTTTTTACTCACTTAACTATTCCATCCTTCTCTT
TACACTCACTTTTCTTCTTCCTTTTTTTTTTTCTTACCCTTTATTTCTTC
CTTACCTCTCTTTTCTATCTCTCTCTTCTTTTTTTATTATCTCTCTCCTC
CCCCCTCCTCTCCTTACCCTCTCCCTCCCTCTTTCTTTTCCTCCCTCTTT
TTTTTTCTTTCCTTCTCTCTCTCTCTCTCCCCTCCCCCTCTCCCTCCTCC
TCCCCTCCCCNNCCCNNNNNNNNNNCACATGCCTTGTTTTCTTATTTTTC
CTNCTTCTCTTCTCCTCTCCCCTCTTCTCTTTCATATATTTTATCTTCTT
TTCCTTCCTTCTCCCCCATATCTCCCTCCCCTTTCTTTTTTNTTNCTTCT
CACATCATCACTATTTGCCCCTTAGGCCCCTTGAGCCGAGTCCCGCCCTT
GTGTCCCTTCTAGTCTATAAAATACAGAGGCTGTAACAACTTTAATTAAT
AAAGAGGTTAAACCTGGGNTCGGNAAATATAAACATCTGATATCTCCTTG
TTGAAAATTTTAAAATACACTTAAACATTCCTTCTCATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_b07.b1 MSMg01no264_b07.b1 CHROMAT_FILE:
MSMg01no264_b07.b1 PHD_FILE: MSMg01no264_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:10 2005
         (313 letters)



>mm_chr3_154031255_154031967
          Length = 713

 Score =  549 bits (284), Expect = e-161
 Identities = 302/308 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaaatatttataaaacacttctgaagttaagggttataaacctttaggtctga 64
           |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattcagcaatatttataaaacacttctgaagttaagggttatatacctttaggtctga 264

                                                                       
Query: 65  aactgtaagagttaagctaatttgtcaactctttgggttccttctgttgaagtgtttgta 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aactgtaagaattaagctaatttgtcaactctttgggttccttctgttgaagtgtttgta 324

                                                                       
Query: 125 aatcatgggtgtttatcaattagtctaagttaacgtcacttcttctggcgtgaatggtag 184
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatcatgggtgtttatcaagtagtctaagttaacgtcacttcttctggcgtgaatggtag 384

                                                                       
Query: 185 agttaacatggcatccagtgccttctcattaaagttctggcaacaattggacagtattga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agttaacatggcatccagtgccttctcattaaagttctggcaacaattggacagtattga 444

                                                                       
Query: 245 ggaccatgaggtatcatacagagaatgcttctacacactgcctgtcaattatctgaggat 304
           ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 ggaccgtgaggtatcatacagagaatgcttctacacactgcctgtaaattatctgaggat 504

                   
Query: 305 gctgttga 312
           ||||||||
Sbjct: 505 gctgttga 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)