BAC Information

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BAC

Clone NameMSMg01-264D08
Chromosome3 (Build37)
Map Location 111,862,924 - 111,863,215
singlet/doubletsinglet
Overlap geneLOC625585
Upstream geneLOC100043190, LOC668712
Downstream geneEG229746, LOC668717, Utp14B-ps, EG433643
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264D08.T7 (MSMg01no264_d08.b1)MSMg01-264D08.TJ (MSMg01no264_d08.g1)
ACCAG405820AG405821
length740825
length of high quality
(start - end)
320 (46 - 365)294 (126 - 419)
definitionCHROMAT_FILE: MSMg01no264_d08.b1 PHD_FILE: MSMg01no264_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:19 2005CHROMAT_FILE: MSMg01no264_d08.g1 PHD_FILE: MSMg01no264_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAGAACTTTAAAAAGAGTCTATAAGGCAAAAAATGCTACTAAAA
AGACAAACTTGCACCCTACAGAAAGGGAGAAGATTTTCACCTGTTGCACT
ACTGAAAGAGAGCAGATTTTCAGAAAATATAAAGAACTTAAGAAACTAGA
TATCAACAAACCAAATAATCTAAGTAAAAAGTGATAGATGTAAATAGAAT
GCTCAACAAAGAAATCTCAAAAGGCAGAGAAGCACTAAAAATGCTCAACA
TCTTGGGTATTCTGAGCTTTTAAGCTAATAATCCATTTATCATTGAATGT
GTATCATCCGTGTTTTTTTTTGCCCCCCCCACTCACTCAGAATGATATTT
CTAGTTCCATCCATTTGCCTAAGAATTTAACATTATTTTTAATAGCTGAG
TAGTACTCCATTGTGTAAATGTACCACACTTTTTGTATATATTCCTCTGT
TGAAGGACACCTGGGTTCTTTCCAGCTTCTGGCTATTATGAATAAGGCTG
CAACGAACATAATGGAGCATATGTCTTTGTTATATGTTGGAGAATCTTTT
GGGTATATGCCCTGATACAAGTCACAGACCACATGAAGCTCAAGAAGAAG
GAAGACCAAAGTGCAGGTTCATTGGTCTTTCTTAGAAAGGGGAACAAAAT
ATTCATGTGAGGAAATATGGAGACAAAATATGGAGCAGAG
CCCCTAACCCTATCTTTTCNNCCCCCTTTTTCTTTAAAAANCNNNNTTTA
CTATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAATCTGATTTTAAATATTAAACA
TTTTCTGATTAATAAAAATAAAGGAATCTGTGAGGACAGCAAGATGGTTC
ATGCAATCAAAGTGTTTGCTAGGCAAGCTTGAGAGCCTGAGTTCAATAGC
CAAAATCAACAGTAGAACTGACTCATAAAAGTGAATGTAGTTAAGATCCA
ATTTAATATGGGATTTTGAATAAAAATTTCATACACTAAAGCTGTAACTT
AAAAAACAAAATATGTGTGAAAATACATATTGTAATATATTATTATTGTG
ACAATATTACAAAGTTATTTTTTTCCTTCCTCCCCCCCCCTTTTTCCTTT
TCTTCAGTTTTCTTTTGATAGAAAACTGGATTTAGAATCTGGAGAAAAGA
ATGAAGGGACAACAAAAGGGTCTTGATTTCCACAGGACAGTAGTTTTCTC
TCTGTGGAGACCAGGGAGAAATAACCTCATCAATGAGAGGTCATTTGACC
ATGACCCTGATGCAGAAAATAATGAAATATAAAATGCCTTTAATGAAAAG
GTGCTGCCCTTCTTAAAAATTGGTTTCATTAGTATATTCTGTTCAAATTG
TGAAGCGCAAATTTTCAGTTGTAGAATGTTAATTTAGAAGTCTCGATAAA
TTTTAAATTTTTTCCCTATAAGCTTGATTGTAACTAACCTCTAAGTATTT
AAATAATCCACAGTACTTAAATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_d08.g1 MSMg01no264_d08.g1 CHROMAT_FILE:
MSMg01no264_d08.g1 PHD_FILE: MSMg01no264_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:20 2005
         (294 letters)



>mm_chr3_111862575_111863268
          Length = 694

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatctgattttaaatattaaacattttctgattaataaaaataaaggaatctgtgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 caaatctgattttaaatattaaacattttctgattaataaaaataaaggaatctgtgagg 582

                                                                       
Query: 61  acagcaagatggttcatgcaatcaaagtgtttgctaggcaagcttgagagcctgagttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 acagcaagatggttcatgcaatcaaagtgtttgctaggcaagcttgagagcctgagttca 522

                                                                       
Query: 121 atagccaaaatcaacagtagaactgactcataaaagtgaatgtagttaagatccaattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 521 atagccaaaatcaacagtagaactgactcataaaagtgaatgtagttaacatccaattta 462

                                                                       
Query: 181 atatgggattttgaataaaaatttcatacactaaagctgtaacttaaaaaacaaaatatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 atatgggattttgaataaaaatttcatacactaaagctgtaacttaaaaaacaaaatatg 402

                                                               
Query: 241 tgtgaaaatacatattgtaatatattattattgtgacaatattacaaagtta 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgtgaaaatacatattgtaatatattattattgtgacaatattacaaagtta 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)