BAC Information

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BAC

Clone NameMSMg01-264E11
Chromosome3 (Build37)
Map Location 46,090,018 - 46,259,516
singlet/doubletdoublet
Overlap geneEG241989
Upstream geneLOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
Downstream geneLOC545517, LOC383849, LOC383850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264E11.T7 (MSMg01no264_e11.b1)MSMg01-264E11.TJ (MSMg01no264_e11.g1)
ACCAG405869AG405870
length727798
length of high quality
(start - end)
299 (429 - 727)237 (176 - 412)
definitionCHROMAT_FILE: MSMg01no264_e11.b1 PHD_FILE: MSMg01no264_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:24 2005CHROMAT_FILE: MSMg01no264_e11.g1 PHD_FILE: MSMg01no264_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,090,018 - 46,090,316)(46,259,281 - 46,259,516)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNCGCGGA
ATTCTTTTTCACGAAAAGTGTATATNTTTGGATGGTTTGGAGNTTTGTNA
AGAAAAANACTTTTAATCTCTAATTTTATTTTAAATACTGATGACCATTT
AGAAGACTGAAACACTATTATTCCTGGGATTCCTAAGATCTCACAAGGCA
GGAAAACAGACATGAGGATGTTGATTGGCTTAAAAATACAACAAAGTTAT
GGATCACAATAAGACACAACCTATGAGAAAGTATTGAAGAAGAAAATGTC
ATAAAGAGTTTTTTATTTTTAGAGGTTAGGATTTTGTTTTTTATGCCATT
CTTAATANATAACCCACCCCCCCCCCCCAAAAGATTTAAACTTAAAACTT
CAAACTATAAAAGTAATGAAAAAAATGAGAAGAAAATGCTCTAGTAAAAT
GTTCGAGAAAAATCTATTTTATCTCAGGGAAAAGGATCATTAGAATTTTG
AAAAGAACAATATCTAGGAAAGATAAAACCAACAAAGTGAACAAGATGTT
AACAAATATACATTTCATAAATGATCACAGTCCAAAGTATTTACAAACAT
CAGACAGAAAGTAAAGAAGTCTCAACTGAGGAATACCGAATGGCCTAGAA
GCACCTACAGAAGTGTTTAATACCCTTAGTCTTCAGGGAAATGCAAATCT
AAACAACCCTGAGATTCTACCTCATAC
ATTATTTTTTTTTTTTTTTTTTTTTTTTANTNTCTTNTATTATTTTTNCT
CTCTATGATANGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCTACTAAGTACAATTCGAT
AGTATTTTTACTGGGAAGTTTAGCCCCCAGTGTGATAGCACTTGGCCATG
AAAATTCCCTAAGCTCACAGTGAAACTGAATGGTATACACAGTCCCAGGA
GACACCAACAATGAAAGAGGAGAGTGATTTAGAGCTTCAAGAAACTGACC
ATTTTAGAATGGACAGAAAGTGTGATTTCTCAGTCCTCCAAAGAGAACAG
AACTTTCTAGTTGGCAATGCTGTATATACACTGGCTCTTTACTTAAACGA
AAATTGTTTCCCCTATTTTTTAAGCTATCACACTATACTAATGTTATAAA
CCATGTCCACAACCAATAATTCTGAATCTTCAATTATACCTCAATGTGAA
AATTGTGGTATTTGTACAGAACTGTTTGCTAATTTCTGAGTCCAAGATCC
AAGGACAAATTGTGTGCTAACCTTTGTTCCTAGCCTTGAGAATATAGCAA
TAACTGAGTATGACATAATTCTTTCCTCTGTTTTTGAACATGTATTAACA
TTTGTAGAGAGATCATGAATATTAATAGGCTCATCAAATGATAGATACCT
CAATTACATATTTTTCTGGCTGTTTGGAAATAACTTGTAAGCATCTTGAA
TACTGTGCTACCCTTCTAACTAACGGTTCCAAAAATTGAAGCTTGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_e11.b1 MSMg01no264_e11.b1 CHROMAT_FILE:
MSMg01no264_e11.b1 PHD_FILE: MSMg01no264_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:24 2005
         (299 letters)



>mm_chr3_46089818_46090516
          Length = 699

 Score =  540 bits (279), Expect = e-158
 Identities = 294/299 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagaaaatgctctagtaaaatgttcgagaaaaatctattttatctcagggaaaaggatc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 gaagaaaatgctctagtaaaatgttcgagaaaaatctattttatctcagggaaaagaatc 260

                                                                       
Query: 61  attagaattttgaaaagaacaatatctaggaaagataaaaccaacaaagtgaacaagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 attagaattttgaaaagaacaatatctaggaaagataaaaccaacaaagtgaacaagata 320

                                                                       
Query: 121 ttaacaaatatacatttcataaatgatcacagtccaaagtatttacaaacatcagacaga 180
           |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 321 ttaaaaaatatacatttcataaatgatcacagtccacagtatttacaaacatcagagaga 380

                                                                       
Query: 181 aagtaaagaagtctcaactgaggaataccgaatggcctagaagcacctacagaagtgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtaaagaagtctcaactgaggaataccgaatggcctagaagcacctacagaagtgttt 440

                                                                      
Query: 241 aatacccttagtcttcagggaaatgcaaatctaaacaaccctgagattctacctcatac 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatacccttagtcttcagggaaatgcaaatctaaacaaccctgagattctacctcatac 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no264_e11.g1 MSMg01no264_e11.g1 CHROMAT_FILE:
MSMg01no264_e11.g1 PHD_FILE: MSMg01no264_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:25 2005
         (237 letters)



>mm_chr3_46259080_46259716
          Length = 637

 Score =  418 bits (216), Expect = e-121
 Identities = 231/236 (97%)
 Strand = Plus / Minus

                                                                       
Query: 2   ccagtgtgatagcacttggccatgaaaattccctaagctcacagtgaaactgaatggtat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ccagtgtgatagcacttggccatgaaaattccctaagctcacagtgaaactgaatggtat 378

                                                                       
Query: 62  acacagtcccaggagacaccaacaatgaaagaggagagtgatttagagcttcaagaaact 121
           |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 377 acacagtcccaggagacaacaacaataaaagaggagagtgatttagagcttcaaaaaact 318

                                                                       
Query: 122 gaccattttagaatggacagaaagtgtgatttctcagtcctccaaagagaacagaacttt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 317 gaccattttagaatggacagaaagtgtgatttctcagtcctccaaagagaacataacttt 258

                                                                   
Query: 182 ctagttggcaatgctgtatatacactggctctttacttaaacgaaaattgtttccc 237
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctagttggcaatgctgtaaatacactggctctttacttaaacgaaaattgtttccc 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)