BAC Information

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BAC

Clone NameMSMg01-264I17
Chromosome3 (Build37)
Map Location 91,894,522 - 91,894,786
singlet/doubletsinglet
Overlap genenone
Upstream gene9130204L05Rik, LOC100042463, Pglyrp3, EG619750, Lor
Downstream geneA030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264I17.T7 (MSMg01no264_i17.b1)MSMg01-264I17.TJ (MSMg01no264_i17.g1)
ACCAG406061AG406062
length738740
length of high quality
(start - end)
308 (431 - 738)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no264_i17.b1 PHD_FILE: MSMg01no264_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:45 2005CHROMAT_FILE: MSMg01no264_i17.g1 PHD_FILE: MSMg01no264_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGAGTGGCCAACTCATAGCTCTGAGGGCCTCCAAAAAGAAACTAC
AGAGAGCATACACTTTCAGCCCGATAGCACACTTAAAAGNTCTAGAATAA
AAGAAATCAAATCACCCAAGAGAAGTAGACAGCAGGAAATATTCAAACTC
AGGGGCAAAATCAACCAAGTAGAAACAAAAAGAACTATTCAAAGAATCAA
CCAAACTAGGTGCTGTTTCTTGGAGAAAATCAACAAGATAGATAAACCCT
TAGCCAGATTCACTATTGTTCACAGGGACAGCATCCTAATTAACAAAATA
AGAATGGATAGATACACCAACCANACCCCCTGAGGAAACCCAAAATANTA
TAAGATCCTTCTACAAAAGACTTACTCAACAAAACTGGAGGACCTGGATG
AAATGGACAAATTTCTATACAGATACCAGGTCCCAATGTTAAATCAGGAT
CAGATTAATGACATAAACAGCCCTATATCCCCTGAAGAAATAGAAGCAGT
CATTAATAGTATTCCAACCAAAAAAAGCCCAGGCCCAGATGGGTTTAGTG
CAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTCTGAAA
CTTTTCCACAAAATAGAAACAGAAGGTACTCTACCCAATTCGTTCTATGA
AGCCACAATTACTCTGATACCTAAACCACATAAAGCCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGAATGCATCCTGGTCTCCCAGA
GAGATTTATTAAGAAGCCTGAACCTGGCTTAAATTTTATATTAATCTATT
CACTTTACACACACACACACACACACATACACACACACACACACACACAC
ACACACACACACACACACACACACACACCAGCATGCACTGGTGCTCTAAG
CCTGTCCTCATCACCAACAGTTTGTGACCTCATCGAGAAGTTCAGTTTTG
TTTCCAGGCTTCTTTTTTGTCATCCATAAAGTCAATCCAGCTCACTTCTG
ACTCTGTCTCTTTGATCCCCTCCCCCATGGCACCCCTCTCTGGACAAAAA
GAAGAGAGATGTGGAAAGGGGCCAAGGTAGTAAAGAAACTAGATAGGATG
ATGAGAACAACACAAGCACATACGCAGAAGTCAAATAAACTAACTTAGGT
TCGTCTAGCACCTTCACTTACTGGGCCATCTCACCAGACCTTATACTTTC
CTTGACACTTTAAAGGCTATGAGAATTTGGGAAAATCCAACACCTTCAGA
GATACTTCATCATCTAAAAGAGAGGATATGGTATGGCTGAGTTCATGGGA
AAAAACCCATAGAGGAAAATCAAACAGTAGCACCAGTAGTGTACACAAGC
CTATGATTATATTCACATGAAAAGTGTACAGGCCCAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_i17.g1 MSMg01no264_i17.g1 CHROMAT_FILE:
MSMg01no264_i17.g1 PHD_FILE: MSMg01no264_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:45 2005
         (287 letters)



>mm_chr3_91894170_91894856
          Length = 687

 Score =  451 bits (233), Expect = e-131
 Identities = 263/287 (91%), Gaps = 22/287 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaatgcatcctggtctcccagagagatttattaagaagcctgaacctggcttaaattt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 617 atgaatgcatcctggtctcccagagagatttattaagaagcctgaaactggcttaaattt 558

                                                                       
Query: 61  tatattaatctattcactttacacacacacacacacacacatacacacacacacacacac 120
           |||||||||||||||||||                      |||||||||||||||||||
Sbjct: 557 tatattaatctattcactt----------------------tacacacacacacacacac 520

                                                                       
Query: 121 acacacacacacacacacacacacacacacaccagcatgcactggtgctctaagcctgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 519 acacacacacacacacacacacacacacacaccagcatgcactggtgctctaatcctgtc 460

                                                                       
Query: 181 ctcatcaccaacagtttgtgacctcatcgagaagttcagttttgtttccaggcttctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ctcatcaccaacagtttgtgacctcatcgagaagttcagttttgtttccaggcttctttt 400

                                                          
Query: 241 ttgtcatccataaagtcaatccagctcacttctgactctgtctcttt 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttgtcatccataaagtcaatccagctcacttctgactctgtctcttt 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)