BAC Information

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BAC

Clone NameMSMg01-264N16
Chromosome3 (Build37)
Map Location 98,418,850 - 98,419,159
singlet/doubletsinglet
Overlap genenone
Upstream geneFmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433
Downstream geneHsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15, M6pr-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264N16.T7 (MSMg01no264_n16.b1)MSMg01-264N16.TJ (MSMg01no264_n16.g1)
ACCAG406286AG406287
length717791
length of high quality
(start - end)
315 (46 - 360)279 (132 - 410)
definitionCHROMAT_FILE: MSMg01no264_n16.b1 PHD_FILE: MSMg01no264_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:09 2005CHROMAT_FILE: MSMg01no264_n16.g1 PHD_FILE: MSMg01no264_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:09 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGGGATGGGACTGGATGCTTAGATCCTAGCTTCATTTCTGTTG
CTGTGACAAACACCCTGACCAGGAGCAGATTCAGGAGAAAAGAATTTATA
TGTTCTATGAGCAATCTCAGGTTACAGTCCATCATTCTGGGGAAACCAAG
GCAGGGACTTAAGAGGCTGGTCACACCACAAACGCAGCAAAGAGCTGAGA
GCAGCAAACGTATCCATGGGACCTGCTTGCTACTTCTGTGCCCTAGAGCT
TTCTTCTGTCTCATGTCTTTCCCATCTTGATTAAGAATAGATGTGCACAT
CTCGTCTATTTTATTTGCTCCCCCCCCTCCTCCAGGAAGCTGAAGCTCAG
TACTCACTGCCTTCCATAGCATAGTGAGTAGGGCCTGGGTTCTAGCTCCT
GACTCATGCATTACTCACTTCTGTCCTCCAGGGAGAATATGACATCCTTA
GATCTTGACCTTTCCCTCAACACTGTGCACCATCCTGTCTAGAGCCCCTA
TGAGATGTCAGGTGTCTGTAATAAACCATAAGTCTGAATCAGAGATGGAC
AATAGGCAGGAAGCCCCAGGTCCAGCATAACATACATTTTCTTAGTTTTC
ATATCACTACTCCAACTTCTCTTTTTACCCTCCTCCTCCTCCTCCCCCTC
CTCCTCCTCCTCCTCCN
CTCTTCTTCTTTTCTTTNCTTCCTCTATTCAATAACATAAACATCCCNCC
TTTTCACTATGATANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTCCAAACTGCAATT
GGTTATTGCAGAATATTGATATTTGACCTATTGCATGCCATCATTTTAAA
TAAAATTGATACTCATCCTAAAAATAAGTTAAAAATTACTTATACATGCT
TTTGTATCTTCTATAAATTCATGCATGCTTGCATCCCATTTACTGTATTT
AAAAACAACCCTTCTATGGGAGAAAAGTATATGTGAATTGGATCACACGT
TTATTCTTTTGAGTTTCCGCCTGCTTCTTTTCAGATAATTAAATTATGTG
CTGTAGATGGTGTTTTTTTTTGTTGAACACCCCCCCCCCCCAAGACCTCT
TAAGGCAATGCCACGCTAGATTTTTATTCCAGGTAGATTATGGATATTAT
ACAAAAATAATTGGCCATATAATCTCATTCTTTACATCATCAAAATAATA
ATGGCTTGAAAATAATAATTTGATATTTAACATAAATAAATAACTAAATG
TGCTTGTCATATTGAAAAGATTTGCTCTCCTTGTCCTCAGTTTCTACCTG
TCCCACACATTCGTAGTTAATTCACGAGGACTTATACTTAATCCAATATT
GCAAGAAAAAACACATTTTTGATTTAGAAAAATAAAATATGCTCTTGTGA
CAATTGAAACCTTTTTAAATTTTTCCAAATATAATCTGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_n16.b1 MSMg01no264_n16.b1 CHROMAT_FILE:
MSMg01no264_n16.b1 PHD_FILE: MSMg01no264_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:09 2005
         (315 letters)



>mm_chr3_98418647_98419361
          Length = 715

 Score =  553 bits (286), Expect = e-162
 Identities = 304/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaggggatgggactggatgcttagatcctagcttcatttctgttgctgtgaca 63
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagggcatgggactggatgcttagatcctagcttcatttctgttgctgtgaca 263

                                                                       
Query: 64  aacaccctgaccaggagcagattcaggagaaaagaatttatatgttctatgagcaatctc 123
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatgccctgaccaggagcagattcaggagaaaagaatttatatgttctatgagcaatctc 323

                                                                       
Query: 124 aggttacagtccatcattctggggaaaccaaggcagggacttaagaggctggtcacacca 183
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 324 aggttacagtccatcattctggggaaactaaggcagggacttaagaggctggtcacacca 383

                                                                       
Query: 184 caaacgcagcaaagagctgagagcagcaaacgtatccatgggacctgcttgctacttctg 243
           ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 384 caaacacagcaaagagctgagagcagcaaacgtatccatgggacccgcttgctacttctg 443

                                                                       
Query: 244 tgccctagagctttcttctgtctcatgtctttcccatcttgattaagaatagatgtgcac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgccctagagctttcttctgtctcatgtctttcccatcttgattaagaatagatgtgcac 503

                     
Query: 304 atctcgtcta 313
           ||||||||||
Sbjct: 504 atctcgtcta 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)