BAC Information

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BAC

Clone NameMSMg01-265F02
Chromosome3 (Build37)
Map Location 41,381,230 - 41,542,837
singlet/doubletdoublet
Overlap genePhf17, Sclt1
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115
Downstream geneD3Ertd751e, LOC666031, LOC100039204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265F02.T7 (MSMg01no265_f02.b1)MSMg01-265F02.TJ (MSMg01no265_f02.g1)
ACCAG406615AG406616
length780736
length of high quality
(start - end)
255 (46 - 300)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no265_f02.b1 PHD_FILE: MSMg01no265_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:46 2005CHROMAT_FILE: MSMg01no265_f02.g1 PHD_FILE: MSMg01no265_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,542,590 - 41,542,837)(41,381,230 - 41,381,516)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACCCTTCGAAGCCTAAAAAGTAAGAACTTACCAACTGAGCCATC
TCCCCAGCTAGACCCTATTTTCACCAGTATTGAATTTCAATTTGTAATCA
TTTTAATTTATCCTTTCCCCGTTGTCTACTGAGTATGAGCTTCTTTTCTG
TTAATTGGCCTCGTAAGAATAAGTGGTGGCACACGTCTTTAATCCCAGCA
CTTGGGAGGCAGTGGCAGACAGATTTCTGAGTTCAAGGCCAGCCTGGNCT
ACNAAGAGAGTTCCAGGACAGCCAGGGCTACNCTTAGAACCCTGTCTCGA
AAAACNNATTTTTTTTTTACCCCCCCCCCCACCCGACNNNNNNNNTTNNT
TACTTAGTNTATTAGTCCGACCTANNATCCAAAAAATACCCCATTCCTCC
TTTCTAGATCTACCTCTACCGTGCCTGGAGTGACCTTTCATTCATCACTT
ATTACCTTGTATCATGTCGTCACTAATATTTCTAATAATTTATAGTAACT
TTTTATTAATAATCTCTTGGTCGCTCCCGCGGAGGGATTGAAAAATTATT
TGTTTTTTGAAAGGCCCTCTGGTTCCCAGTTGGCCCTCCCGTTACCTCAA
ACAATTCGCGTACTGCCCCTAAAATTCAATCCAGATCCACCTCAACCGTA
AACATACTTCTTCTGCCGCCTTAAGATTCTTTAATATAAATAAAAAATAT
ATTTATAAAAACTTTTGTGCGCCGTCTTAT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAACCATGATAGTGGTTGAAGACC
AAACCCATAGGGAAGTAGGGGGACTTGACAGAGTTACACGATGTCAATCA
GTAAGCTTTGGCAGTCACATACAAGAAAGGATGACTAGGAGCTGTTGGTA
TGGGTCAGTGGTTAAGGGCACTGGCTGTTCTTACAGAGGACTCGGGCTTG
AATTCCAGCACATGGTGGCTCACAACCATCTATAACTCCAGTTCCAGGGG
ATCTTATGCCCTCTCAGGCACCAGGCATGTATGTGGTGCATTGTCATATG
TGCAGACAAAACATTTATATATACTACATGACCCAAGGGAATGGATTCCA
CTGTTAAGGAAACCACTCTGTGACTCTAATGTACTTAAACCTTGTGTGTG
TGGAGTATGCAGATGGTGTCTGGAGTCATATGCAGACATGCTTTTCCTCT
CTGGCTACGCCACCTTGATGCTTACCTCCATTCCTCAGCCTTCTGGGTTC
ATACAGGCTCTTGTTAGTGTTCACCACTGTTGAGCACCGGGGATGCTGGC
TTTCCTTTTTCGCCTGTCTTCATTCTGTAGGCCAGAAGCTCTGCAAAGCC
AGGTCCCACCTTTTCAGGTGTTTGCCGCTCATGCAGGTGGGCATCTTACT
GCTTTCTCTGGAGTTTTGTGAGGAGTCCTTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_f02.b1 MSMg01no265_f02.b1 CHROMAT_FILE:
MSMg01no265_f02.b1 PHD_FILE: MSMg01no265_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:46 2005
         (255 letters)



>mm_chr3_41542403_41543057
          Length = 655

 Score =  410 bits (212), Expect = e-119
 Identities = 239/248 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacccttcgaagcctaaaaagtaagaacttaccaactgagccatctccccagct 64
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gaattcaatccttcgaagcctaaaaagtaagaacttaccaactgagccatctccccagct 376

                                                                       
Query: 65  agaccctattttcaccagtattgaatttcaatttgtaatcattttaatttatcctttccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agaccctattttcaccagtattgaatttcaatttgtaatcattttaatttatcctttccc 316

                                                                       
Query: 125 cgttgtctactgagtatgagcttcttttctgttaattggcctcgtaagaataagtggtgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cgttgtctactgagtatgagcttcttttctgttaattggcctcgtaagaataagtggtgg 256

                                                                       
Query: 185 cacacgtctttaatcccagcacttgggaggcagtggcagacagatttctgagttcaaggc 244
           | |||| |||| ||||||||||||||||||||| ||||| | ||| ||||||||| ||||
Sbjct: 255 cgcacgcctttgatcccagcacttgggaggcagaggcaggcggatctctgagttcgaggc 196

                   
Query: 245 cagcctgg 252
           ||||||||
Sbjct: 195 cagcctgg 188


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no265_f02.g1 MSMg01no265_f02.g1 CHROMAT_FILE:
MSMg01no265_f02.g1 PHD_FILE: MSMg01no265_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:46 2005
         (287 letters)



>mm_chr3_41381030_41381716
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaccatgatagtggttgaagaccaaacccatagggaagtagggggacttgacagagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaccatgatagtggttgaagaccaaacccatagggaagtagggggacttgacagagtta 260

                                                                       
Query: 61  cacgatgtcaatcagtaagctttggcagtcacatacaagaaaggatgactaggagctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacgatgtcaatcagtaagctttggcagtcacatacaagaaaggatgactaggagctgtt 320

                                                                       
Query: 121 ggtatgggtcagtggttaagggcactggctgttcttacagaggactcgggcttgaattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtatgggtcagtggttaagggcactggctgttcttacagaggactcgggcttgaattcc 380

                                                                       
Query: 181 agcacatggtggctcacaaccatctataactccagttccaggggatcttatgccctctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcacatggtggctcacaaccatctataactccagttccaggggatcttatgccctctca 440

                                                          
Query: 241 ggcaccaggcatgtatgtggtgcattgtcatatgtgcagacaaaaca 287
           ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 ggcaccaggcatgtatgtggtgcattgtcatatatgcagacaaaaca 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)