BAC Information

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BAC

Clone NameMSMg01-265F14
Chromosome3 (Build37)
Map Location 83,176,452 - 83,316,798
singlet/doubletdoublet
Overlap genenone
Upstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
Downstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265F14.T7 (MSMg01no265_f14.b1)MSMg01-265F14.TJ (MSMg01no265_f14.g1)
ACCAG406636AG406637
length752748
length of high quality
(start - end)
276 (23 - 298)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no265_f14.b1 PHD_FILE: MSMg01no265_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:48 2005CHROMAT_FILE: MSMg01no265_f14.g1 PHD_FILE: MSMg01no265_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,316,527 - 83,316,798)(83,176,452 - 83,176,743)
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGAAGGGTTACTCATGG
TCATTTTTTTTTTCTGCAAAGGAGAAGTAGGGTCTTATGTCTCCTGTATT
CCCGTCAGAAGCGGTATATCAGCATAGCATTTAGAGTCTTCCACAGTTGA
GCAAAACCCATGGTAACCCCCTGAGGCATACAACACTCATCTCAGCAGGG
CCTACTTGATGGATTATGGGTATTGCCATTCAGTGTGAACTGAAATCATA
TCTAACAACTTTTCATTGTAATACAAGGATACACACACACACACACACAC
TTACTCACACACACAGAGAGAGAGAGAGAGAGAGAGAGATATTTATATAG
CACGACACCCAGAGAGAGACCAAGCCTTTGAATCTCTGTGTTACCACCGA
AAGCATGTAAACTTTAACGTGTTTAAAATATTAAACATCTATTAAACCCA
ATCTGTACAAGCTTACTAACTAATATCCCAACACTTATTTGAAATATTCC
GACAAAGTCAGACAGATCATCAGACATTATCCCCACAGATTACTTCAGAG
TCTCAAACCGAAGAGTCACTTTTTAATTCCAGTTTCCTAAGAGTTCTTCT
ACTGAAGCCTACAAACCAAGCACCTCTCTTCACTTATACACAGCTATCAT
TTTACTTTAATACTATTCTTTCTACCGCATAACCAAGTTATCTCAACTCA
CTCTTTAACTTTTCAGTTACTACTATTCCACCTTTCAGTACGACAATAAT
CC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGTTTCTTCACAATAAGATTGT
GTCATTAGTAAGGCCTGTCTTGTAAGTTACACATCCATATGCAATGTTTA
GAGCAGAGCATTTCACAGTGTAAGAGCTCCACAAACGTTAACTCTTGTCC
TCTTTAAAAAGACATTTGACCTGGAGTTCAGAATTATAGGCAGCTAAAAT
CTGTACAAATAAGGCAAACTACACACTTGATTTTTCTCTTTCAAAAGATT
CAAATCACTTTAAAAGCAACTAATTTTTTGTGGGAGTTGAAGGAAGTTTG
ATGTTTATTAAGGTCAAGTGTCTTTCTATCCCCAGGCTCGCTGTGGCGAT
TGTTAGACTCAAGAGCTCGCCAGGGGAATTTACCCACATCTGGTTGAATA
GAAGCCCTCCCACAAAAGCCTTCACCTAGGAACCACGACACATTGCTCTC
CTTTCTTTTAAGCTGAGAATGCCCTGACTTGGCCTTAGTCAGCACAAGCT
AGAATATTCAGGGACAGGACAGAAATGTTCATAGCTTTGGGTTCTTTAAG
ACATATGACAGGAAAATGCTTATTTATTTGGAATATATTTTATCCACTTA
CAATGGGCAGATTTTACCAAAATATAATGTTGTAAGCATATGAATATGGA
ATATTGAAGTCCATTATATATGCTGACAAATTTTTAAAGCTGATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_f14.b1 MSMg01no265_f14.b1 CHROMAT_FILE:
MSMg01no265_f14.b1 PHD_FILE: MSMg01no265_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:48 2005
         (276 letters)



>mm_chr3_83316323_83316998
          Length = 676

 Score =  472 bits (244), Expect = e-137
 Identities = 265/272 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagaagggttactcatggtcattttttttttctgcaaaggagaagtagggtctt 64
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 476 gaattctagaagggttactcatggtcatttttttttcctgcaaaggagaagtagggtctt 417

                                                                       
Query: 65  atgtctcctgtattcccgtcagaagcggtatatcagcatagcatttagagtcttccacag 124
           | |||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aagtctcctgcattcaggtcagaagcggtatatcagcatagcatttagagtcttccacag 357

                                                                       
Query: 125 ttgagcaaaacccatggtaaccccctgaggcatacaacactcatctcagcagggcctact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ttgagcaaaacccatggtaaccccctgaggcatacaacactcatctcagcagggcctact 297

                                                                       
Query: 185 tgatggattatgggtattgccattcagtgtgaactgaaatcatatctaacaacttttcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 296 tgatggattatgggtattgccattcagtgtgaactgaaatcatatctgacaacttttaat 237

                                           
Query: 245 tgtaatacaaggatacacacacacacacacac 276
           ||||||||||||||||||||||||||||||||
Sbjct: 236 tgtaatacaaggatacacacacacacacacac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no265_f14.g1 MSMg01no265_f14.g1 CHROMAT_FILE:
MSMg01no265_f14.g1 PHD_FILE: MSMg01no265_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:48 2005
         (292 letters)



>mm_chr3_83176252_83176943
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtttcttcacaataagattgtgtcattagtaaggcctgtcttgtaagttacacatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtttcttcacaataagattgtgtcattagtaaggcctgtcttgtaagttacacatcc 260

                                                                       
Query: 61  atatgcaatgtttagagcagagcatttcacagtgtaagagctccacaaacgttaactctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatgcaatgtttagagcagagcatttcacagtgtaagagctccacaaacgttaactctt 320

                                                                       
Query: 121 gtcctctttaaaaagacatttgacctggagttcagaattataggcagctaaaatctgtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcctctttaaaaagacatttgacctggagttcagaattataggcagctaaaatctgtac 380

                                                                       
Query: 181 aaataaggcaaactacacacttgatttttctctttcaaaagattcaaatcactttaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaataaggcaaactacacacttgatttttctctttcaaaagattcaaatcactttaaaag 440

                                                               
Query: 241 caactaattttttgtgggagttgaaggaagtttgatgtttattaaggtcaag 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caactaattttttgtgggagttgaaggaagtttgatgtttattaaggtcaag 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)