BAC Information

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BAC

Clone NameMSMg01-265G06
Chromosome3 (Build37)
Map Location 39,338,744 - 39,338,992
singlet/doubletsinglet
Overlap genenone
Upstream geneAnkrd50, LOC100041378, LOC665855, LOC100040824, Fat4, LOC100041432, LOC100040853
Downstream geneLOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265G06.T7 (MSMg01no265_g06.b1)MSMg01-265G06.TJ (MSMg01no265_g06.g1)
ACCAG406666AG406667
length819841
length of high quality
(start - end)
320 (98 - 417)248 (126 - 373)
definitionCHROMAT_FILE: MSMg01no265_g06.b1 PHD_FILE: MSMg01no265_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:51 2005CHROMAT_FILE: MSMg01no265_g06.g1 PHD_FILE: MSMg01no265_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTNNCCNNCNNCNCCCCCTTTTTTTGTGTTTTTTTTNNNTT
TCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAATGGAAGAAACTCGAATGGTTGAGACAAACTTAAATGTTC
AACATCCTTAGTTGTGAGGAGCCGCCCTCACAGTCGCCATTACAAGATGG
CGCTGATATCCGTTGCTCGTAGTAAAATGTGCGCAGGTGTCAGGGTATCG
TTCCATTACCTGAGCCCTGCCTTTCTCGTGGCGTTAACTGACTGATAGTG
GGCAGCCAATCCCAGTGGTGCACATCTCCAACCATTTTTTTCGCAGCCTA
TAAAAGGGAAGGGTTTTCTGCTCTCTGGGTCTCCTCTCCTGAAGCTGATC
ATCTATCTCTCGAGATGTATTATAGCTCGCCCCGCCCAAGGATCCGAGTG
GCCTGCATGCGTTTTGCTGCCCAGACGGTAGCGTGAGTCACTTATTCACC
AGGGAAATGAAAATCAAAATAACCCTGAGATTCCACCTCATACCAGTCAG
CATGGCTAAGATCAAAGACTCAGGTGACAGCAGTTGTTTGCAAGGATGTG
GAGAAAGAGGAACACTCTTCCATTGTTGGTGGGAATGCAAGTTAGTATAA
CCATTTTGAAAATCAGTCTGCCAGTTCCTTGAGAATAATGCGAATAGTAC
TACCCGAAGATCCTGCTATTAGTATTCCTTGGACTTATACCCAAAAGCTG
ATCCATCCTTTGGGGCTGAAAAACATGGCTTCCGTAGTTTAAATACATTT
GACCTGCTCCTTCCAAATA
NTTTTTCCCNTTTTTTTTTTTTTCTTATGTTTGTTTTTATNNNNNTTATC
TATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTAGGTCCTGGCTCTAACTGGCAA
TCTATTGGCATTTCATAGCAGCTGGTGGAGGGGAGATGATGAGTCTGTGA
GGGTGTGGTCAAAACAAAACAAAAAGACTTGAAGTTTGGATTTTGGAAAC
ATGGGAGACTGACAAGGTCATATTTTATTGTATACCTGCACAAAAGCCTC
CAAAGAATAGAATTAAAAAATAGAATTTATGAGAATAAAACTTCCAAACA
ATTAATTGGTAAACATGAACAAATCTTACACATTAAAATTTAAAAATTGA
GGAAACAGCAGTCATTTTTTCTCCTCCCCCACTCCCCCCTGACAGTTCCA
CAGGCGTTCATCATAAGGCCGCCGAAGAGGATGATATGGACAAAGAGTTC
GGAAGCTTGATAACTAGAATGATAGTTAATCCAGAGATGACACTGATGAA
CGTAAGAGTGATATTGCAAAGATTAACCCTTAACGGTGAGCTAGGAAAGG
GCAGCTTAATATAGAGAATATTTAAAATTAGCCTCAAAAGAAATTTTAAA
GGTAAAAATTTGGAACTATGTCAGGACAAAATTTCCTAGCTTTGCATTAC
CATGTCCCGAAACTTACGAATAGTCCGAAGGGTATTTATTGATAAGGGAA
TCCGCATGGTCCCCGTGATCTTGTAGTAATTCTCTTCTTTTACTCTCTAA
TTTTACCATACCTATTTTTTATTTTGTAGTCTTAAGGTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_g06.g1 MSMg01no265_g06.g1 CHROMAT_FILE:
MSMg01no265_g06.g1 PHD_FILE: MSMg01no265_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:51 2005
         (248 letters)



>mm_chr3_39338544_39339192
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%), Gaps = 1/249 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaggtcctggctctaactggcaatctattggcatttcatagcagctggtggaggggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaggtcctggctctaactggcaatctattggcatttcatagcagctggtggaggggag 260

                                                                       
Query: 61  atgatgagtctgtgagggtgtggtcaaaacaaaacaaaaagacttgaagtttggattttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgatgagtctgtgagggtgtggtcaaaacaaaacaaaaagacttgaagtttggattttg 320

                                                                       
Query: 121 gaaacatgggagactgacaaggtcatattttattgtatacctgcacaaaagcctccaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaacatgggagactgacaaggtcatattttattgtatacctgcacaaaagcctccaaag 380

                                                                       
Query: 181 aatagaattaaa-aaatagaatttatgagaataaaacttccaaacaattaattggtaaac 239
           |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 aatagaattaaacaaatagaatttataagaataaaacttccaaacaattaattggtaaac 440

                    
Query: 240 atgaacaaa 248
           |||||||||
Sbjct: 441 atgaacaaa 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 649
Length adjustment: 9
Effective length of query: 239
Effective length of database: 640
Effective search space:   152960
Effective search space used:   152960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)