BAC Information

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BAC

Clone NameMSMg01-265J07
Chromosome3 (Build37)
Map Location 106,889,365 - 106,889,610
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432
Downstream geneKcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265J07.T7 (MSMg01no265_j07.b1)MSMg01-265J07.TJ (MSMg01no265_j07.g1)
ACCAG406805AG406806
length864870
length of high quality
(start - end)
313 (95 - 407)245 (128 - 372)
definitionCHROMAT_FILE: MSMg01no265_j07.b1 PHD_FILE: MSMg01no265_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:07 2005CHROMAT_FILE: MSMg01no265_j07.g1 PHD_FILE: MSMg01no265_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAAACACCCCCCCCACCCCCCAAACAACACCACCATCTTTTTNTTTATC
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTATTTTGGTCTATACCCCATTTTTAAATTGAGTTAATTGGGTTA
TTGGTGTCTAATTTCTTGAGATCTTTAGAAATTTTGGATATTTGTCTTCC
ATCAGATATAGGGTTGGTAAAGATTCTTTCCCATACTTTGGGCTTCTGAT
TTGTCCTATTGGCAGTGTCCTTTCCCTTATAGAAGCTCTTCAGTTTCATG
TGGTCCCATTTATCAATTGTTGATCTTAGAGCATGAGCCATTGGTAATCT
GATCAGGAAGTTATCTCCTGTGTTTTTGTGTTCAAGGATATTTCCCACTT
TCTGTTCTATGATTNNNATTANTTCCCCNNACCAAGCCCATGCCCTTGAT
GTACTTAGACTTGAATTTCATGCAGCATGATAAGAAAAAATCTATTTTCC
CTCTTCTCAATGTAGATATCCAGCTAGTCCAGCACCGTTTGTTGAAGGTG
ATTTCCTTTTTTCATTGTATGTTTTTGGCTTCTCTATCAAAAATAACCAG
TTCATAGGTGTGTGGGTGTATTTCTCAGTCTTTTAATTCAATTCCCTTTG
TTATTTGTGTCTTGTTTCTGGAACCAAAAACCATGGCCATTTCTTAAATA
CTAATTGCCTTTTAACGTATATCTTTGATGGTCAGGATTCGGGTGAAATC
CTTCCTCCTAAGCCTCTTTCCTTATTGTACCAAGGTACTGTGTTTTGGAT
TAAGCCCTGAGGCTTTTTGGTTCTATACCAATATTTTAAAGTATGTATTA
TATTTTCCTCCTTN
TATTTTATTATTTCTTNCTTTTCTATTTTTATATTTTNATAANNTNNNNT
TACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTGAGTATATCTAAGTGACAA
TATGCCTAAGATCTGTAATAGGAAAAAAAAACCTGAACATAGCTCCAGTG
TCCATCTCTGAGCAGCTCATAAACTATGTTAAGTTGAATTGTATTTATAC
AAATGCATTAAATGCTGGACAGATGGCTCAGTGGGTGAAGGTATTAGCCG
TGCAAGCCAGATGACCTGAGTTCAAGTCATAGACCCGGCATAAAGGAGCC
AGGTATAATGCTGGGCCTCTGTAATCTCAGTCTTCCCTCCGACAAGATAG
AAGGTAGTGGCAGGAGATTTTATTATGCTCCGCCCCGCACGCTCAAAGGC
CAACCAGCCTCAGCTATTCAGCACAGCAGCCTCAAAAAGAAAAGTCTCTT
GCCTCAATCTGGTGGTTAAAAAAAACCAACTTTCAAAAAGTTTGTCCTCT
TGACCTCCATGTCTGTGCCACGATATGTGCAATCATGTATTATAAAGAGG
TACATATTAATATTAAAATATATATTTTAAAAATAAGAGTATTTCCTGTT
TTAATTAGGAAAAGTGGTTCTTCAATTTATGCATTCTGTTTATTATCATG
TAATTTTTTATACAATATTATTTCAATTATGGTTACTTTTTTTGTGGTTC
CTCTTTTTCCCCTTAATTCATCGCGAATAATCATATACCCCTGAACCTAA
TATTTCGCGCCTCTTAGCCACATCCATTCCTACTATATTATTTATCTTTT
TTCAAACCTTAAATCACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_j07.g1 MSMg01no265_j07.g1 CHROMAT_FILE:
MSMg01no265_j07.g1 PHD_FILE: MSMg01no265_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:07 2005
         (245 letters)



>mm_chr3_106889274_106889919
          Length = 646

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%), Gaps = 1/246 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttgagtatatctaagtgacaatatgcctaagatctgtaatagg-aaaaaaaaacctga 59
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 337 agttgagtatatctaagtgacaatatgcctaagatctgtaataggaaaaaaaaaacctga 278

                                                                       
Query: 60  acatagctccagtgtccatctctgagcagctcataaactatgttaagttgaattgtattt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 acatagctccagtgtccatctctgagcagctcataaactatgttaagttgaattgtattt 218

                                                                       
Query: 120 atacaaatgcattaaatgctggacagatggctcagtgggtgaaggtattagccgtgcaag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 atacaaatgcattaaatgctggacagatggctcagtgggtgaaggtattagccgtgcaag 158

                                                                       
Query: 180 ccagatgacctgagttcaagtcatagacccggcataaaggagccaggtataatgctgggc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 157 ccagatgacctgagttcaagtcatagacccggcataaaggagccaggtatagtgctgggc 98

                 
Query: 240 ctctgt 245
           ||||||
Sbjct: 97  ctctgt 92


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 646
Length adjustment: 9
Effective length of query: 236
Effective length of database: 637
Effective search space:   150332
Effective search space used:   150332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)