BAC Information

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BAC

Clone NameMSMg01-265J14
Chromosome3 (Build37)
Map Location 93,584,847 - 93,585,083
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563
Downstream geneTdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265J14.T7 (MSMg01no265_j14.b1)MSMg01-265J14.TJ (MSMg01no265_j14.g1)
ACCAG406819AG406820
length837759
length of high quality
(start - end)
239 (177 - 415)295 (77 - 371)
definitionCHROMAT_FILE: MSMg01no265_j14.b1 PHD_FILE: MSMg01no265_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:08 2005CHROMAT_FILE: MSMg01no265_j14.g1 PHD_FILE: MSMg01no265_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:08 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTCATATTACAACNAAAACTAAAATACTTTTTCTTTTTTTTCCNTNTTCA
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTGTACACCCAANGTCTAATGATGCCTGATTCCTCCTCTTCCTC
TGTCTCTGAAGTGCTAGTGCCCACCCGCTGCACGACTTGTATTCCATTCA
TTTAAAAATATCTTATTCATTATATCCTTTTCATGACCTTAAACAAAACT
CTTAATTTGTTCCTTATGTATTAAAAAGTCAAGTATTTAATTCCTCTGAG
GGGAGAAGTAGGAAGATCTCTGTGTTTTTATGTCCAACTTGATCTAAAGA
ATAAGTTCCAAAACAGCCAAGGCCATGTATAGACACTCTGTTTCATGAGA
GAGATGGGGGCGATTTGATAGTTAACCCCCCCCCCACGAAAATGGTTTGT
CATTTTGTGGAGGGTTACCACCGTTTTTAGATCACAATAATCTTGAGATT
GTCTCAGGAAATTGCTTATAGACAAGATTGTGATCAATGAATCAAAATCC
TGTCTAGAAGGGGTGAAAATAACTGTTTTCTCTATATACCTAAAAAGTGT
GATATTCTAAGGGGACTGCATTGTGAAAATTCAGAGAGTCCCTGAGTGCC
TTGATCCTATGTGTCCCATCATACATATTGGAGATTCCTGTCTCCAAATC
CCAAAACAAACTTCACCAAATCTTCACTTCAACATTCTACTCCCCTTTAA
TTATGAACTCCACTATAATTATGTAACTTATGATATACTTAAAGTCTTAA
GGTTGGCCCCTCCTTGATAATTAATATTTCCCGTACC
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTAGCTTCACCAGCCATGAG
CCATCAAAGATACCTGTGGAGTGTGAGGAGAAAGTGGAAGTCACAAGAAA
GATAGCAAGCCTCTTGCTAATGGAAAAAGGGAGATGTGGCTCTACCATCA
AAAGTCAAGTCTGCCCACCTGGGACCCAATGATGGCACCAGGGGAGAAGG
TACCTAGAACCTTGGGTTGTGACAGTCACTCCTCCATCTGGAGAAAGAAC
TTCCCCTTGGAATCTGAATCACTTCCTGACTTCATAGGACATCACAAAAT
TTTTATTACTATTAAAGGTTTTTTGTGAGATTACACCCCACAAGATACTA
GAACTAAAAATTGTCTGGGTCTCTTTTCAAGCTATTCTCTAGATTTCTGT
GGTCAACATAATAATGTCACTAGTAGTACCTGACATCGTTTGGTTCTTTG
TTCTTGGTGGCAAAGTATTAAACACAATGCTTTCACAGTTCTAACATCCA
TCGTATTTATAGGATACTCATGCATCAAATGAGAATTAGATTTATCTACA
ACATCTCAAATCAAAATCACTCTGGATATCTTGCTACCAAAAAATAAAAA
GGAGGAGATGCCAGATTGCTTATGAAAAACCTCCAAGGAATCAGAGGAGA
GTCTGTTGACTCTCTTTCTTCTAACACAGAGTTTTCTTGGAAAATGTTTT
AAGCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_j14.b1 MSMg01no265_j14.b1 CHROMAT_FILE:
MSMg01no265_j14.b1 PHD_FILE: MSMg01no265_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:08 2005
         (239 letters)



>mm_chr3_93584647_93585285
          Length = 639

 Score =  435 bits (225), Expect = e-126
 Identities = 234/237 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgcacgacttgtattccattcatttaaaaatatcttattcattatatccttttcatga 60
           |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 gctgcacgacatgtattccattcatttaaaaatattttattcattatatccttttcatga 260

                                                                       
Query: 61  ccttaaacaaaactcttaatttgttccttatgtattaaaaagtcaagtatttaattcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttaaacaaaactcttaatttgttccttatgtattaaaaagtcaagtatttaattcctc 320

                                                                       
Query: 121 tgaggggagaagtaggaagatctctgtgtttttatgtccaacttgatctaaagaataagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaggggagaagtaggaagatctctgtgtttttatgtccaacttgatctaaagaataagt 380

                                                                    
Query: 181 tccaaaacagccaaggccatgtatagacactctgtttcatgagagagatgggggcga 237
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tccaaaacagccaaggccatgtaaagacactctgtttcatgagagagatgggggcga 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)