BAC Information

Click to search

BAC

Clone NameMSMg01-265M08
Chromosome3 (Build37)
Map Location 138,822,789 - 138,823,092
singlet/doubletsinglet
Overlap geneEG229879
Upstream gene4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, Tspan5, LOC620771, Rap1gds1
Downstream geneB930007M17Rik, LOC100039840, LOC229883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265M08.T7 (MSMg01no265_m08.b1)MSMg01-265M08.TJ (MSMg01no265_m08.g1)
ACCAG406938AG406939
length825844
length of high quality
(start - end)
313 (98 - 410)167 (76 - 242)
definitionCHROMAT_FILE: MSMg01no265_m08.b1 PHD_FILE: MSMg01no265_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:22 2005CHROMAT_FILE: MSMg01no265_m08.g1 PHD_FILE: MSMg01no265_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:22 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTTTTTTGTTTTTTTTTTTGNGCCAAATTAGTATAATTTATATTTTTTTT
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGTATTCACACCAGCTTGCATTCTTCAGTATAATTTTCTACCAAATTATA
ATAACACGTTAAAGATAGTTTTTTACTTGTAGTAAGTTTTCATTTTAACC
ACCTTTTAAAAATTAATTGCCTATGGTAACTTATTTTGTCTATATAACCT
GTATATAGTAAAACACCATTTTTCATGCAGAGAATTGAAATTTTAGGGAG
CACTTCTTTTTAGTCATTTCTAGGCATAATAAGGGCTGACCTACCTTTGA
ATAAAACTTTGTCAAATGGCAAATAAAAAAAAAGTGCTCATTAAAGACGG
ATAGCTCAAAAGGAATTTTTTACTGCACACACCCCCACGACCTGAGTTTG
AGACGTCAGCCCTCAAGCCCCACGCTAGGTGCAGACTTTGGGAATCTGTA
ACCCTAGCGTCTCTGGTAAAAAAACAGGAGGATTGCCGAGGCTTTCCTGT
TGCCTGTGTAGCTCTAGATTTGGTGAGAGACAAGGCTATAAGGTTGATGT
TGAGAGTACCACATCCCAAACCCTCCTCTGGCCTATGAACATCCCCACAC
ATATGATCACCCACTCCAAATTAGGATAGTGATAATGAATGGCGGAGGGC
TGGGGGTACACTTCAGTACATGACAGGGTAACCTAACTACCGGAGGAGCT
TCCTGTGGTTTCATTCCCCAGCCCTGAATTAGCAATAAAAATGGTATTAA
ATTACTTGCAAGTTAATTCATGTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAGTCTGGGCATTTTTTTTACATT
CATCTTAAAATACCTGAAAACTTAAAATATCCTATCATCTGCTCTGTGTG
TGGGGGGGGGGGTGTGACAAGAGAGAAAGTGAGAGAGAGAGAAATTCTAA
TTTTTTATTTTAAAGTAAAAATTTCATATGAATTCCATTGTTTCTGAAAG
TTGAGAGTGTATTTTATTTCAAGTCTGGTTTGAAAGTAGTAACTTGTATC
TTATTCTGTATATGTGAATATTTTTTGTTATTGTGGCTAATAGAAAGGAT
ATAAAAAAAAAGTTTTTGGTAGTTTCCCAGAACAAAACCCCCGTTTTATT
TTTAAAATAAATTTTTTTTTCCCCCCCTTTTTTAAAAAAAAAAAAAAAAA
TTTGGGGGGGGGGGGGTGGGTTGCGTTTCCTACTAATTACCAATTTGAAG
TAATAGATTGGATACAATATTCTACTTTATGTTAGTTCATGTGAACAAAT
GAAAAAATATATATTGAAGAAGATATATAATAATTTTAATAATAATAATT
TTATTTAACATAATAACATATAACAAAGGTATGAGTTATATTTTAGACTA
GAAAAGAATATATTGTATTTGATGTTTTATTATTATATTTTAGGGTAATA
GTAGAGAGATGTTTTTTCTAATTATACATAACATCTAACTACAATATTAT
TAATGGATATCAGATTGTGTATAGTTTAATTTTTATTATAAGTGTTTTTA
TATTAATTGATATAATAAATTTAAATTATATTAGCTATCATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_m08.b1 MSMg01no265_m08.b1 CHROMAT_FILE:
MSMg01no265_m08.b1 PHD_FILE: MSMg01no265_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:22 2005
         (313 letters)



>mm_chr3_138822583_138823292
          Length = 710

 Score =  571 bits (295), Expect = e-167
 Identities = 303/307 (98%), Gaps = 3/307 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   attcacaccagcttgcattcttcagtataattttctaccaaattataataacacgttaaa 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attcacaccagcttgcattcttcagtataattttctaccaaattataataacacgttaaa 266

                                                                       
Query: 67  gatagttttttacttgtagtaagttttcattttaaccaccttttaaaaattaattgccta 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gatagttttttacttgtagtaagttttcattttaaccaccttttaaaaattaattgccta 326

                                                                       
Query: 127 tggtaacttattttgtctatataacctgtatatagtaaaacaccatttttcatgcagaga 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tggtaacttattttgtctatataacctgtatatagtaaaacaccatttttcatgcagaga 386

                                                                       
Query: 187 attgaaattttagggagcacttctttttagtcatttctaggcataataagggctgaccta 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 attgaaattttagggagcacttctttttagtcatttctaggcataataagggctgaccta 446

                                                                       
Query: 247 cctttgaataaaactttgtcaaatggcaaataaaaaaaaagtgctcattaaagacggata 306
           ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| 
Sbjct: 447 cctttgaataaaactttgtcaaatggcaaa---aaaaaaagtgctcattaaagacggatg 503

                  
Query: 307 gctcaaa 313
           |||||||
Sbjct: 504 gctcaaa 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 710
Length adjustment: 9
Effective length of query: 304
Effective length of database: 701
Effective search space:   213104
Effective search space used:   213104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)