BAC Information

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BAC

Clone NameMSMg01-265O16
Chromosome3 (Build37)
Map Location 106,014,536 - 106,014,845
singlet/doubletsinglet
Overlap geneChi3l4
Upstream gene1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3
Downstream geneEG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265O16.T7 (MSMg01no265_o16.b1)MSMg01-265O16.TJ (MSMg01no265_o16.g1)
ACCAG407042AG407043
length718732
length of high quality
(start - end)
314 (37 - 350)282 (74 - 355)
definitionCHROMAT_FILE: MSMg01no265_o16.b1 PHD_FILE: MSMg01no265_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:34 2005CHROMAT_FILE: MSMg01no265_o16.g1 PHD_FILE: MSMg01no265_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:34 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATA
CAAGGTCTTATATCCAATAGTGTCCCTGGCATGCCTTTCACCAAAACTAT
AAATAGATGCCCGAAAGCAATGCCTATTCCTACCACAGATCACAGGAACT
GAATCTCGGAGGAAAGGCAAGGACCTTAGAAGTTTAATGTCTTCTCAAAG
TTGCTAATTAATTATTATGGAATTTGATGTGTCAAACAAAGTATTTAAGT
GAAGATGTATACTTCCAAAAGGAATGATTTCACTTAAAATATTTACTGAT
GAGGATTGAGAATATAATAAAGATCCATATACTTGTCACTTTTGTTACTA
TTTAGTANGTGACCCACCATCCCCTAAGTTACTTGAACTGACAAGTAGTC
ACTACACCACCCGATAAACACTTCTCAAATTTACTATTATTTAAGTAGCC
TGCGCTTAAAGTATGATAATGAAGAACTTTATTAAGAATTACTCAATATT
GAAAAACTTCTATAATGTTATGTCAGAAAAATGACTAGTATGAGAAATAT
TTATAAAAAGCACAGATATGTTATATAATGGAGGCCAAGTGTTTTGATAT
TTTGCTTTTTCTGTACTTTTTGAGGAACACTGAGCTAAAAACTCTCCTGG
CCATTGGAGGATGGAAGTTTGGACCTGCCCCGAAAGTTCTATAACATGGG
CTACTAGGCTTTGTAGGG
TCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTGCCCCATTTTTA
ATAGGGTTATTTGGTTGTCTGGAGTCTAACTTCTTGAGTTCTTTTTATAT
ATTGGATATTAGCCCTCAATCAGATGTAGGATTGGTAAAGATCTTTTCCC
AATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAG
AAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTACAGC
ACAAGCCATTGCTGTTCTGCTTAGGAATTTTCCCCCTGTGCCCATATCTT
CGAGGTTTTTTCCNATTTTCCNACCTACCCCCTTCAGTGTCTCTGGTATT
ATGTGGAGGTCCCCCACCAACTTAGAATAGAACTTTGTACGAGGAGATAA
GAATGGACCAATTAGCATTCTTCTACATGATAACCACCAGTTGTGCCAGC
ACCATTTATTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCC
TTGTCTAAGATCAAGCGACCATAGCTGAGTGGATTCATTTCTGGGTCTTC
CATTCTATTCTTTTGATCTACCTTTTCTGTCCCTGTACCAGTACCATGCA
GTTTTTATCACAATTGCTCTGTTACATAGTTTGTAGCCAGGCTTGTTGGA
TTCCACCATAGGTTCTTTTTTTGTTGAGATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_o16.b1 MSMg01no265_o16.b1 CHROMAT_FILE:
MSMg01no265_o16.b1 PHD_FILE: MSMg01no265_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:34 2005
         (314 letters)



>mm_chr3_106014332_106015045
          Length = 714

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatacaaggtcttatatccaatagtgtccctggcatgcctttcaccaaaactat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcaatacaaggtcttatatccaatagtgtccctggcatgcctttcaccaaaactat 455

                                                                       
Query: 65  aaatagatgcccgaaagcaatgcctattcctaccacagatcacaggaactgaatctcgga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aaatagatgcccgaaagcaatgcctattcctaccacagatcacaggaactgaatctcgga 395

                                                                       
Query: 125 ggaaaggcaaggaccttagaagtttaatgtcttctcaaagttgctaattaattattatgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ggaaaggcaaggaccttagaagtttaatgtcttctcaaagttgctaattaattattatgg 335

                                                                       
Query: 185 aatttgatgtgtcaaacaaagtatttaagtgaagatgtatacttccaaaaggaatgattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aatttgatgtgtcaaacaaagtatttaagtgaagatgtatacttccaaaaggaatgattt 275

                                                                       
Query: 245 cacttaaaatatttactgatgaggattgagaatataataaagatccatatacttgtcact 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 274 cacttaaaatatttactgatgaggattgagaaaataataaagatccatatacttgtcact 215

                     
Query: 305 tttgttacta 314
           ||||||||||
Sbjct: 214 tttgttacta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)