BAC Information

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BAC

Clone NameMSMg01-266E14
Chromosome3 (Build37)
Map Location 85,813,286 - 85,813,498
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019
Downstream geneSh3d19, Rps3a, LOC634201, Lrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266E14.T7 (MSMg01no266_e14.b1)MSMg01-266E14.TJ (MSMg01no266_e14.g1)
ACCAG407318AG407319
length750756
length of high quality
(start - end)
274 (45 - 318)215 (535 - 749)
definitionCHROMAT_FILE: MSMg01no266_e14.b1 PHD_FILE: MSMg01no266_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:02 2005CHROMAT_FILE: MSMg01no266_e14.g1 PHD_FILE: MSMg01no266_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATAGGCTTGAAAGACAATATGTCAAGAGAATTTTAAGTTTTTCAG
TGCATTTGTGTTTTTGTTTGTTTGTTTGTTTTTATGGGGAGGCATATGCC
ACAGCTCTATGTGAAGGTCAGAGATAATCTGAAGGAGACGGTCAGTCCTG
GTGAATGAACTCAGGTTGTTAGACTTTTCAGCAAAAAGCATTATCCACTA
AACCCTCTCACTGACCCAGAGGATAATTTTCAACAGACAAAAGTTTTCAA
CAAATTTCTGGAAAACAAAAGATATTTTGGGGATGTGCTGATAGGTGCAT
TGGAAGAGATCGACTTCCCTTCCCNGATCGNGGCCCGAANGAGGGAGCTC
TAGGGTAGCCAACAACCACCCCTATTAAAGAAAAAAGAACCATACGGGAT
GGGCAAGGTTGAGTCATGAGTGTTAACATTCCCAATTCCCTCTCCCTCTC
CCAGACAAAGCCCTTGAGCAACCTGACAGACCAAACATGTCAACACTCAT
GTCTAAAGAATCTGAGCCGACTGCAGCGAGGAGTGAGGTGTTGGTTTCTG
ATCCGATTTTTGCTATTTCGAATAGACTCCTTATCCTGTCTGGCCATCTT
ATATTCCCATACTTTGCCATTCACTCCGGTTTAGTCTTCGCTACTCACTT
GTTCATTTTCCTTTGCGCGTTTCTTCCTTTTTACTTCTCTTCTCCCTTCC

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTAGATGACATTATTACCAAG
CAATACTTGACATCGCTTAAGTATTAGAAAAAGATGCTGAATATGCATAA
AACTTAAAATGATAGAAAAAAGTGAAAGAAGACATGTGTCTAGATGTTAG
AGTCAAAACCAAACGAAACCAAATCAAAAAACAACAACAAAAAAAAAAAA
AACCACAAGTAGATAAAAGATTGCTATAGAATCATAAATCAGTTGAAAGG
TACTTTACAAAGGAACTTTTACCTTATGGCCTAAGTTTGCTTTTTAATGG
ATGTAATTGATGTTTCNATAANCACACCCCCACCCGCCGACTCTGTCAGA
AACAGGAGAACAAGAGCTGNGACCACAGCCTAAATCAACATATTCCTGTA
CCCTAGATTTCTCTCTTCTCCTATGCTAACACACACACACACACACACAC
ACACATGCTCTCACACACACACACACACATGCATGCCAGCCAACTGTTCT
ACTATTAAACTACAACCACCAGTCCTGCAACCTTTTAAAAACCCAAAACT
TAAATATAATACATGACAGTTAAATCTAAAAGAAAACCAAAAGATTCCTG
TAAACATATTCCTCATGTATTATAGGAATAAACTTGAGAAAAATTTCAAG
TCAACATACTTGGAATAAGATCATTTGTAAGAAAAGTTAATTCTTGTTCA
CAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_e14.g1 MSMg01no266_e14.g1 CHROMAT_FILE:
MSMg01no266_e14.g1 PHD_FILE: MSMg01no266_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:02 2005
         (215 letters)



>mm_chr3_85813086_85813698
          Length = 613

 Score =  389 bits (201), Expect = e-113
 Identities = 211/215 (98%), Gaps = 2/215 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccagccaactgttctactattaaactacaaccaccagtcctgcaaccttttaaaaaccc 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gccagacaactgttctactattaaactacaaccaccagtcctgcaaccttttaaaaaccc 354

                                                                       
Query: 61  aaaacttaaatataatacatgacagttaaatctaaaagaaaaccaaaagattcctgtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 353 aaaacttaaatataatacatgacagttaaatctaaaagaaaacc--aagattcctgtaaa 296

                                                                       
Query: 121 catattcctcatgtattataggaataaacttgagaaaaatttcaagtcaacatacttgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 catattcctcatgtattataggaataaacttgagaaaaatttcaagtcaacatacttgga 236

                                              
Query: 181 ataagatcatttgtaagaaaagttaattcttgttc 215
           ||||||||||||||||||||| |||||||||||||
Sbjct: 235 ataagatcatttgtaagaaaaattaattcttgttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 613
Length adjustment: 9
Effective length of query: 206
Effective length of database: 604
Effective search space:   124424
Effective search space used:   124424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)