BAC Information

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BAC

Clone NameMSMg01-266G19
Chromosome3 (Build37)
Map Location 63,387,359 - 63,387,722
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr149, LOC676984, LOC666967, Mme
Downstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266G19.T7 (MSMg01no266_g19.b1)MSMg01-266G19.TJ (MSMg01no266_g19.g1)
ACCAG407416AG407417
length742757
length of high quality
(start - end)
176 (432 - 607)364 (391 - 754)
definitionCHROMAT_FILE: MSMg01no266_g19.b1 PHD_FILE: MSMg01no266_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:12 2005CHROMAT_FILE: MSMg01no266_g19.g1 PHD_FILE: MSMg01no266_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXATATTCCGGACCGGGCGGAATCC
TGNCTGATTACAAGACCGCAAAGAGAGGAAATTGGAGCTGGNGTGGGTTT
TTAAAACCTCTTGCCCCGCCCTGTGGCACACTTCCTCCAACAAGGCCATC
TTCCTCATTCTTTCTAAACAGTTCCACCAACCTGGAACAAGCATTCAAAT
ATAAGACCCTAAATGGGCCATTTGTATTCAAATCACCAAAATGGCCCATT
CCACAACTCATTAAGGTCTGTGAGAAGCACCATTTCGGTTAGTTATTTTG
TGAATATTTGAATTTTGTGGTAAATGCCTCCAGTTTTGTGTAACCAGGGC
TTATATTTTTTTAACACCCCCCCACTTATCTCAACAAATGAAAGAAGTCT
GAAACAGAGGCATCCTGAATTGCAAATACGAAAAGCCATCAAGTTTCCAG
GACACTTCCAACTTTCTACTTATTCAGCTGCAAGTGTCTGTGTGTATCTT
GGTGTGTATATATTTGTGTATGTCTGTGTGTGTATAACTATGTGTATATA
TATATATATATATATATATATATATACATATGCATATATACATATATATA
TGTGTGGTGTCCACACCCACTCCTTTCACCACACCACAAACAACCACACA
CTTTTTTTTTTTTTCCCCCCCTTCTCACAACCTTCCCGCTAAAATTATCT
TTCTCGCACAATCTCACCCTCCTTTTCAATACTTATTTTTTT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATTTTAAAATCTGACATATT
TGGTGAAGATCAAAAACAAAAAACAAAACCAAAAAAAACCTCATGTGACT
AAACTTTCCAGTCAACATTGTTGTTTAGAGACCAGGGTTCCCGTAAGTTA
TGTGGTCTACAGTTAAGCTAAGGAAAGGGAGAGGTCACGTGTCTCTTCCT
CTATCCTTTTCACAGTTCCACCAGATACAAGCTGGGCACAAGGAGGGTGC
TGGAATTTCCATAGCTTGATGTTGATGAAGAATTTCAATGACACTGACTT
AGAGGTCATTTTTCCATCTTGTGTGTTCCTACCCCCGCCACTGCCTTTTC
AAGAGGGTGGGGAACACATTTACAAATAGCTCCATGAATTTCACGCTTGA
AAACATTGAAACAGGCACACTGTTGAGGACCACTCACAGGGCTCTACCCT
GATGCTCTCTCATGCTTATCCAGAATCTCTTTGGTAGCCACTTTGAAATG
TGCTGAATGCTCCTGCCTCACCCTGGAGCCCTCCCTTCACCTTGCACTAT
GGCCATGACACTAGAGCTGGACAGCCTGTCAAGCTGCCCTATTGCACAGA
GCTCATTTTCAGAGATGTAAAAAGGCTGGCAGATTGAGGAGGAAGAGAGA
GCTGATCTTATTTTCATGCCCAGGAGTAATTGGGCGGAAAGGCGATGCTC
TGGGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_g19.g1 MSMg01no266_g19.g1 CHROMAT_FILE:
MSMg01no266_g19.g1 PHD_FILE: MSMg01no266_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:12 2005
         (364 letters)



>mm_chr3_63387159_63387922
          Length = 764

 Score =  673 bits (348), Expect = 0.0
 Identities = 360/364 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgccttttcaagagggtggggaacacatttacaaatagctccatgaatttcacgcttga 60
           |||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||
Sbjct: 564 ctgccttttcaagagggtggggaacacatttagaaatagctccatggctttcacgcttga 505

                                                                       
Query: 61  aaacattgaaacaggcacactgttgaggaccactcacagggctctaccctgatgctctct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 504 aaacattgaaacaggcacactgttgaggaccactcacagggctctaccctgatgctcttt 445

                                                                       
Query: 121 catgcttatccagaatctctttggtagccactttgaaatgtgctgaatgctcctgcctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catgcttatccagaatctctttggtagccactttgaaatgtgctgaatgctcctgcctca 385

                                                                       
Query: 181 ccctggagccctcccttcaccttgcactatggccatgacactagagctggacagcctgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccctggagccctcccttcaccttgcactatggccatgacactagagctggacagcctgtc 325

                                                                       
Query: 241 aagctgccctattgcacagagctcattttcagagatgtaaaaaggctggcagattgagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagctgccctattgcacagagctcattttcagagatgtaaaaaggctggcagattgagga 265

                                                                       
Query: 301 ggaagagagagctgatcttattttcatgcccaggagtaattgggcggaaaggcgatgctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggaagagagagctgatcttattttcatgcccaggagtaattgggcggaaaggcgatgctc 205

               
Query: 361 tggg 364
           ||||
Sbjct: 204 tggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)