BAC Information

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BAC

Clone NameMSMg01-266J10
Chromosome3 (Build37)
Map Location 141,495,076 - 141,495,361
singlet/doubletsinglet
Overlap geneUnc5c
Upstream geneLOC621343, 4930590L14Rik, Pdha2, LOC100039923
Downstream geneBmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266J10.T7 (MSMg01no266_j10.b1)MSMg01-266J10.TJ (MSMg01no266_j10.g1)
ACCAG407533AG407534
length728728
length of high quality
(start - end)
316 (46 - 361)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no266_j10.b1 PHD_FILE: MSMg01no266_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:24 2005CHROMAT_FILE: MSMg01no266_j10.g1 PHD_FILE: MSMg01no266_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGTGTGCTGAGGCTCCCCTTGTTGCTTCCTGTAATTTGACTGA
AACTGAAACAGGTCATGTGTGCCCACAGCACCATGTATGCTGTCATGATG
GTGGCTATGAGCACACGCTTCATTCACATGACTCAGACTGAAGACTTTCA
TGTGCTTTGAATGGCGGGGTTTTCATATACATGCAAAGTTTTTTCTCCTT
AGAAATTAATTTTAATTAACAAATGTTTTAGTAGTTCCTTATGTCATTAA
TTGTCAGATGAATTTAATTAATTCTACTAAGTATCATAGCAACAATTTCT
AAATCAACTCTATTGTACTCCCCCCACCCCGCGCTATATATTTCTGCTAA
GTGACCTTCTCACCCCCCCCAAATACATAATTAAAATATTGACCTGAAAA
ACACTGACAAACACTGAAAATGCTCCTTCCCTACCCTGCAGTATCAACTA
CTCTACCAATATTTAATTCATTATGTAAATATATTCAAACACATTTATGT
CCTTAGTGCTCAGATTTGCTTTACTCATTATCTTATGTTAAATTTATATA
TACCACACATTTGTTTTACCACTGCCCACATTTGATTTTATAACTTGCCA
TCACTAAATATTTGTTCTGTGCACCTGCTTTATCTTCCTCTCTATATACC
TGTATCATGTCCCTATTCTCCTCCAGCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCCTGACCTGAGCAAATTAATC
TCTTCTGGGAAAGGATAATTTGGGGAATAAGAGGTCCAAGATCAAAGTAT
ATCATTAGCTATTTTCATATATTCTATGATTCTACAGATTTTAATTATTC
CACTATCAAAGAGTAGAGACATCCTTTAGGGGAAAGTTGCAATGACTATA
TTTAGGATCCTCTAGGAAATAGGTATTAAAACTAGGTTTTAAAGACATTT
CTCCTAAAAATGATTGAAAGGGAAACACTCAGAGGGTAGGATTTAGACAG
TTCACATCTGGATTTATTTATATGCCCGCCTCCCTCTCTGTGTGTCTCTG
ATGAGGACCTGGCACCTACGACCCTGGAACATTCACACACACCTACATAG
CCATAGGACAAAGAGAGCTTATAGGGAGAATGTTCTATCCCACAATCCAT
ACACATCCCTACAGTCTGCGCTCTGGAGCTAATCAATGTAGAAGGATGTT
AGATAATATGAGAGAAAAAGTAAGAAAGATTTACTTATTCCCCGGTCTTC
AAGATGAACACGAATTTGAGCTGAGTAATTGCTCTGGAAAAGTAATCTAT
TCAGAGATATGTGCTGGTGTAAGTCCAAGGCCAGTGGTGGCAAAGGAGGA
TTACAGAAACACAGTGTGTGTGGACTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_j10.g1 MSMg01no266_j10.g1 CHROMAT_FILE:
MSMg01no266_j10.g1 PHD_FILE: MSMg01no266_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:25 2005
         (287 letters)



>mm_chr3_141494876_141495562
          Length = 687

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcctgacctgagcaaattaatctcttctgggaaaggataatttggggaataagaggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcctgacctgagcaaattaatctcttctgggaaaggataatttggggaataagaggtc 260

                                                                       
Query: 61  caagatcaaagtatatcattagctattttcatatattctatgattctacagattttaatt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 caagatcaaagtatatcattagctattttcatatattctatgattctaaagattttaatt 320

                                                                       
Query: 121 attccactatcaaagagtagagacatcctttaggggaaagttgcaatgactatatttagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attccactatcaaagagtagagacatcctttaggggaaagttgcaatgactatatttagg 380

                                                                       
Query: 181 atcctctaggaaataggtattaaaactaggttttaaagacatttctcctaaaaatgattg 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 atcctctaggaaataggtattaaaactaggttttaaggacatttctcctaaaaatgattg 440

                                                         
Query: 241 aaagggaaacactcagagggtaggatttagacagttcacatctgga 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagggaaacactcagagggtaggatttagacagttcacatctgga 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)