BAC Information

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BAC

Clone NameMSMg01-266M15
Chromosome3 (Build37)
Map Location 83,825,246 - 83,996,328
singlet/doubletdoublet
Overlap geneD930015E06Rik, Mnd1, Trim2, EG624713
Upstream geneFga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2
Downstream gene6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266M15.T7 (MSMg01no266_m15.b1)MSMg01-266M15.TJ (MSMg01no266_m15.g1)
ACCAG407683AG407684
length756747
length of high quality
(start - end)		348 (384 - 731)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no266_m15.b1 PHD_FILE: MSMg01no266_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:40 2005CHROMAT_FILE: MSMg01no266_m15.g1 PHD_FILE: MSMg01no266_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,995,981 - 83,996,328)(83,825,246 - 83,825,529)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAAAGTTTATGTGGTTGGAAGAAAAAAAAAGATATAGCTAGAC
ACTTAGAATATAGCAGTTCTCTACCATGGGCAATTCTGTACACACACACA
CACACATTTGGTGATACCTAAACCCATTTTAGGTGTCTTAGCAATGGTGT
AGGAATATGCTATAGATGTGGAGTAGAGGAGGGAACTCTGTTAAGCATCC
TATATGCACAGGGCATCCTCTGCTACAAGGACTATCTGGCCATAACCGTT
CCGCCAAGACCTATGCACCATCAATAGTTAACCCAGATGGTTGAAGGGAG
ATTTAAATAGATTTGTACTCCTGACCGACTCACTTGTTCCTTCATGTTTC
CTTTTAAAGGTGATGCACCCACCCTAGTAAAAAGCGCTTGCATTTAGAGA
CTGAAGGTATAGGCAGGCTTTGGAGTATTCCTAGGTAGAAGTTAAATAAT
GACCACTAACAACTCTCCTGTCTCTCAGACTCCCAGAAATAGATTCTGCT
CTTCAGTTCATCTCAGAAATCATCCATCAGTTAACCAACCAAAAGGCCAG
CATTGTGGATGACATCCACTCCACCTTTGATGAGCTGCAGAAGACTTTAA
ATGTTCGCAAGAGCGTGCTGCTCATGGAGTTGGAGGTCAACTATGGTCTC
AAACACAAAGTAAGGCTCTGCAGTCCTGCAGGCTTCTGGGGGGGGGGTTC
CGCTAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTTTACCTAGAAAATGCTCAG
GAGTGCCTGCCCAGCTTAAGTGGCGCTGTACAACCTGCCTGTGACTGAGC
ACAAGCCAGGACCAAATAATTATTTCCTGTGAGCTCCGGAGTATGGGAGG
GCTTGGGGTGAGGGAGAGAGGGAGGGGAACAGAAGGCAAGGCAAGCAGAT
ACTCACAAAGTCTTATAAGTTATCCCTGGCTACGAGTTAAACTGTGTGGT
CATCCTGCCAAAACAACAGACTTGTTGGGATACAGGCAGAGAGCATAGCA
ATGTAGCTGCTTGCCTTAGTACCNAANACCTGNCCGCCAGTTGATGCCAA
GAAGGACCCCTGCATGCCCCACAAAAAGAAAAAAAACCCTGTCAGCGCCC
GCACCAAGCCTCTGATCGCCAGACCTGGACAGCATACATTTCTACTGTTC
TAAGCACCAGTTTGTGGTACTTCCTGACATCAGTCCTAGAAAATTAACAC
GGCACACTTGAACTCAGTTCCCTTTCTTCCTACCCTACTCTATTTGGCCC
CCTCATCTGGCAAATATCCCTGCAGTAGCACAGAGGAACCTCAGGGAATT
CCCAGTCTATATGGCTTAGTTGGGGAGTCCCCTCTCCCATATAACTACAC
ATGATAAGCCTTTGTCTAAATGTTATTGCTTCTCTATGGCTCCCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_m15.b1 MSMg01no266_m15.b1 CHROMAT_FILE:
MSMg01no266_m15.b1 PHD_FILE: MSMg01no266_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:40 2005
         (348 letters)



>mm_chr3_83995781_83996528
          Length = 748

 Score =  642 bits (332), Expect = 0.0
 Identities = 344/348 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgttccttcatgtttccttttaaaggtgatgcacccaccctagtaaaaagcgcttgcat 60
           ||||||||||||||||||||||||||||||||||  || | |||||||||||||||||||
Sbjct: 548 ttgttccttcatgtttccttttaaaggtgatgcaagcagcatagtaaaaagcgcttgcat 489

                                                                       
Query: 61  ttagagactgaaggtataggcaggctttggagtattcctaggtagaagttaaataatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttagagactgaaggtataggcaggctttggagtattcctaggtagaagttaaataatgac 429

                                                                       
Query: 121 cactaacaactctcctgtctctcagactcccagaaatagattctgctcttcagttcatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cactaacaactctcctgtctctcagactcccagaaatagattctgctcttcagttcatct 369

                                                                       
Query: 181 cagaaatcatccatcagttaaccaaccaaaaggccagcattgtggatgacatccactcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cagaaatcatccatcagttaaccaaccaaaaggccagcattgtggatgacatccactcca 309

                                                                       
Query: 241 cctttgatgagctgcagaagactttaaatgttcgcaagagcgtgctgctcatggagttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cctttgatgagctgcagaagactttaaatgttcgcaagagcgtgctgctcatggagttgg 249

                                                           
Query: 301 aggtcaactatggtctcaaacacaaagtaaggctctgcagtcctgcag 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aggtcaactatggtctcaaacacaaagtaaggctctgcagtcctgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no266_m15.g1 MSMg01no266_m15.g1 CHROMAT_FILE:
MSMg01no266_m15.g1 PHD_FILE: MSMg01no266_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:40 2005
         (286 letters)



>mm_chr3_83825046_83825731
          Length = 686

 Score =  495 bits (256), Expect = e-144
 Identities = 277/284 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttttacctagaaaatgctcaggagtgcctgcccagcttaagtggcgctgtacaacct 60
           ||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 201 actttttgcctagaaaatgctcaggagtgcctgcccagcttaagtggaactgtacaacct 260

                                                                       
Query: 61  gcctgtgactgagcacaagccaggaccaaataattatttcctgtgagctccggagtatgg 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 gcctgtgactgagcacaagccaggaccaaacaattatttcctgtgagctccggagtatgg 320

                                                                       
Query: 121 gagggcttggggtgagggagagagggaggggaacagaaggcaaggcaagcagatactcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagggcttggggtgagggagagagggaggggaacagaaggcaaggcaagcagatactcac 380

                                                                       
Query: 181 aaagtcttataagttatccctggctacgagttaaactgtgtggtcatcctgccaaaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtcttataagttatccctggctacgagttaaactgtgtggtcatcctgccaaaacaa 440

                                                       
Query: 241 cagacttgttgggatacaggcagagagcatagcaatgtagctgc 284
           ||||| ||  ||||||||||||||||||||||||||||||||||
Sbjct: 441 cagacatgaagggatacaggcagagagcatagcaatgtagctgc 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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