BAC Information

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BAC

Clone NameMSMg01-267M23
Chromosome3 (Build37)
Map Location 108,412,555 - 108,412,874
singlet/doubletsinglet
Overlap geneWdr47
Upstream gene6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, LOC100043166
Downstream geneClcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267M23.T7 (MSMg01no267_m23.b1)MSMg01-267M23.TJ (MSMg01no267_m23.g1)
ACCAG408427AG408428
length750798
length of high quality
(start - end)
323 (46 - 368)124 (126 - 249)
definitionCHROMAT_FILE: MSMg01no267_m23.b1 PHD_FILE: MSMg01no267_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:57 2005CHROMAT_FILE: MSMg01no267_m23.g1 PHD_FILE: MSMg01no267_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGAAGTCCAAAATCAGCTTAATGATCTCAACCTCTTTCACATTC
ACCGTTTCTTCAGCAGTCATATTGCTAGCCTAAATAAATAGGAACAAGGA
AGAACTTAGTCCTGTAGTTTTATGAGGAAGTTTAATCGCCTAGAAATGAG
AATGTTGCTTGGGAATTTTAGTACATTGTTTCACAGTGAAATTAACTATC
AAAACTGAGTCATTCTTTAATGTGTTAAAAATATGGCTCATGGTTTTAAA
AGTACTAATCTGTGAGAAATACCCACTGGAGTAGTGACATTAAATTTTGA
GGTCTGAAGTACCTCAGATTATTCTAGCCCCGACCGCATCAGGCATGCCT
AAGACTCAGACACTGTGCCACAATGCTGTCACCTACAACACCCATCTCAA
GAACATCTCCCCTTCCCCAGTGAAGTTACCAAAAAAAAAAATCATAATTC
TAAGTAAGTTTATAATTTTGTTCTGGGCTGAATTCATATCTATCCTTGAA
AACATGTAGCCTGTAGATCAAATGTTGGTCATTTGTGAGTCAGTTTGGAG
TAAAATAAGGCTCAACTGAAATATACAACTAGGTAATATCAGTGTCATAG
TGATAATATCAATTATAGTTCAACACTTTAAAACTCCTTCCATTGAGATT
GGATTGGAATGAATACTTGTTCTGCCAAAGAACATAGCAACAAAATAACA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTCCCCTTCTTTGCTCTGACTATC
TTTTCCTTCTCCTGGGAAGTCCTCCCCAGCACTGTCTGTCCTGTCTCCCA
GACTGGTTAGATACCTTTCTGGTTTCCCAAGACACTTTGGTTTTGTTTTT
TAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGN
GTTTTTTTTTTTTTTTTTTGTTTTTTTNTTGGTTTGGTGGTTTTTTGTTG
GTGTTTTGGGGGGGGGTTTTTTTTTTTTTTGNNTGTGTTGTGGGGGGGGG
GGGGGGTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCGGGGGNGGNGGGN
GGGNGGGNGGGGGGGGGGCCCCCCCCAAAAAAAAAAAAAAAAAACGGGGG
GGGGGGGGCGGGCCGCNCCCCCCGCCCCCCACGCCCCGCCCGGGGGCCGA
CCCCAGCACAAAAAGAAGAGGAAAGGGAAGACAAAGACCCGAACACGCCA
AACAAACCACACGACGACNACAACACGACGAACGCGACAACGAACCGAGG
AGACAGCGAAAACCCACAACCGAGAACGGAACGAAGAGCCACACACGAGA
AGGACAGCCACCAACCGCAAAAAACCGCGCCAGGAGCCAGTACTTATATT
CTTTTTTACTCACCTCTTCTTTACCCTTTATTTTTATGATTAGTAGTCTA
CTCTACAGTAACAAGTTGTACCCCTCAGCACCGTCTCCTTAACTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_m23.b1 MSMg01no267_m23.b1 CHROMAT_FILE:
MSMg01no267_m23.b1 PHD_FILE: MSMg01no267_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:57 2005
         (323 letters)



>mm_chr3_108412351_108413074
          Length = 724

 Score =  611 bits (316), Expect = e-179
 Identities = 319/320 (99%), Gaps = 1/320 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagaagtccaaaatcagcttaatgatctcaacctctttcacattcaccgtttct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaattcaagaagtccaaaatcagcttaatgatctcaacctctttcacattcaccgtttct 465

                                                                       
Query: 65  tcagcagtcatattgctagcctaaataaataggaacaaggaagaacttagtcctgtagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tcagcagtcatattgctagcctaaataaataggaacaaggaagaacttagtcctgtagtt 405

                                                                       
Query: 125 ttatgaggaagtttaatcgcctagaaatgagaatgttgcttgggaat-tttagtacattg 183
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 404 ttatgaggaagtttaatcgcctagaaatgagaatgttgcttgggaatgtttagtacattg 345

                                                                       
Query: 184 tttcacagtgaaattaactatcaaaactgagtcattctttaatgtgttaaaaatatggct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tttcacagtgaaattaactatcaaaactgagtcattctttaatgtgttaaaaatatggct 285

                                                                       
Query: 244 catggttttaaaagtactaatctgtgagaaatacccactggagtagtgacattaaatttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 catggttttaaaagtactaatctgtgagaaatacccactggagtagtgacattaaatttt 225

                               
Query: 304 gaggtctgaagtacctcaga 323
           ||||||||||||||||||||
Sbjct: 224 gaggtctgaagtacctcaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 724
Length adjustment: 9
Effective length of query: 314
Effective length of database: 715
Effective search space:   224510
Effective search space used:   224510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)