BAC Information

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BAC

Clone NameMSMg01-267N05
Chromosome3 (Build37)
Map Location 91,894,525 - 91,894,734
singlet/doubletsinglet
Overlap genenone
Upstream gene9130204L05Rik, LOC100042463, Pglyrp3, EG619750, Lor
Downstream geneA030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267N05.T7 (MSMg01no267_n05.b1)MSMg01-267N05.TJ (MSMg01no267_n05.g1)
ACCAG408439AG408440
length734732
length of high quality
(start - end)
318 (46 - 363)232 (128 - 359)
definitionCHROMAT_FILE: MSMg01no267_n05.b1 PHD_FILE: MSMg01no267_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:59 2005CHROMAT_FILE: MSMg01no267_n05.g1 PHD_FILE: MSMg01no267_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGAGAGGGAAACTCATAGCTCTGAGGGCCTCCAAAAAGAAACTA
CAGAGAGCATACACTAGCAGCTTGATAGCACACTTAAAAGCTCTAGAATA
AAAGAAATCAAATCACCCAAGAGAAGTAGACAGCAGGAAATATTCAAACT
CAGGGGCAAAATCAACCAAGTAGAAACAAAAAGAACTATTCAAAGAATCA
ACCAAACTAGGTGCTGTTTCTTGGAGAAAATCAACAAGATAGATAAACCC
TTAGCCAGATTCACTAGAGGGCTTTTTTTACAGCATCCTAATTAACAAAA
TAAGAAATGATTTGAGATANACTTTAANACATNNTCCCGAAANCCAAAAT
ATCATAAGATCCTTCTACAACAGGCTATAATNCACNAAAATGGAAAACCT
GGATGAAATGGACAAATTTCTATACAGATACCAGGTCCCAATGTTAAATC
AGGATCAGATTAATGACATAAACAGCCCTATATCCCCTGAAGAAATAGAA
GCAGTCATTAATAGTATTCCAACCAAAAAAAGCCCAGGCCCAGATGGGTT
TAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTC
TGAAACTTTTCCACAAAATAGACACAGAAGGTACTCTACCCAATTCGTTC
TATGAAGCCACAATTACTCTGATACCTAAACCAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGAATGCATCCTGGTCTCCCAGAG
AGATTTATTAAGAAGCCTTAAACCCGCTTAAATTTTATATTAATCTATTC
ACTTTACACACACACACACACACACATACACACACACACACACACACACA
CACACACACACACACACACACACACACCAGCATGCACTGGTGCTCTAAGC
CTGTCCTCATCACCAACAGTTTGTGACCTCATCGAGAAGTTCAGTTTTGT
TTCCAGGCTTCTTTTTTGTCATCTATAAAGTCAATCCAGCTCACTTCTGA
CTCTGTCTCTTTGATCCNTCTCNNTACGNANCCCTCTCTGGACAAAAAGA
AGAGAGATGTGGAAAGGGGCCAAAGANGTAAAGAAACTAGATAGGATGAT
GAGAACAACACAAGCACATACGCAGAAGTCAAATAAACTAACTTAGGTTC
GTCTAGCACCTTCACTTACTGGGCCATCTCACCAGACCTTATACTTTCCT
TGACACTTTAAAGGCTATGAGAATTTGGGAAAATCCAACACCTTCAGAGA
TACTTCATCATCTAAAAGAGAGGATATGGTATGGCTGAGTTCATGGGAAA
AAACCCATAGAGGAAAATCAAACAGTAGCACCAGTAGTGTACACAAGCCT
ATGATTATATTCACATGAAAAGTGTACAGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_n05.g1 MSMg01no267_n05.g1 CHROMAT_FILE:
MSMg01no267_n05.g1 PHD_FILE: MSMg01no267_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:59 2005
         (232 letters)



>mm_chr3_91894225_91894856
          Length = 632

 Score =  344 bits (178), Expect = 2e-99
 Identities = 208/232 (89%), Gaps = 22/232 (9%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaattttatattaatctattcactttacacacacacacacacacacatacacacacac 60
           |||||||||||||||||||||||||||                      |||||||||||
Sbjct: 510 ttaaattttatattaatctattcactt----------------------tacacacacac 473

                                                                       
Query: 61  acacacacacacacacacacacacacacacacacacacaccagcatgcactggtgctcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 acacacacacacacacacacacacacacacacacacacaccagcatgcactggtgctcta 413

                                                                       
Query: 121 agcctgtcctcatcaccaacagtttgtgacctcatcgagaagttcagttttgtttccagg 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atcctgtcctcatcaccaacagtttgtgacctcatcgagaagttcagttttgtttccagg 353

                                                               
Query: 181 cttcttttttgtcatctataaagtcaatccagctcacttctgactctgtctc 232
           |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 352 cttcttttttgtcatccataaagtcaatccagctcacttctgactctgtctc 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)