Query= MSMg01no268_d01.b1 MSMg01no268_d01.b1 CHROMAT_FILE:
MSMg01no268_d01.b1 PHD_FILE: MSMg01no268_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:26 2005
(320 letters)
>mm_chr3_101618068_101618787
Length = 720
Score = 542 bits (280), Expect = e-158
Identities = 311/330 (94%), Gaps = 14/330 (4%)
Strand = Plus / Minus
Query: 5 gaattctccagctggctagaccagaacccataccatgacagacagccca----------- 53
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gaattctccagctggctagaccagaacccataccatgacagacagcccaccagtggctgg 524
Query: 54 ---cctttttaagtctctgcactccagctccaagcagaggccagtgggtcccgttcctct 110
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 523 tgtcctttttaactctctgcaccccagctccaagcagaggccagtgggtcccgttcctct 464
Query: 111 ctcaagtgtggggagtcatcgtaagtctcagggaaagttccagagaaggacgcagctgga 170
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctcaagtgtggggagtcatcataagtctcagggaaagttccagagaaggacgcagctgga 404
Query: 171 actctacctgtcacctgactcgtcacaaccccctctgccacggtcaagcctagaacttgc 230
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 403 actctacctgtcgcctgactcgtcacaaccccctctgccacggtcaagcctataacttgc 344
Query: 231 ttccatttcaggagcgagctctgtgctgtggcctggcatgtccttcacatctggatgtga 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttccatttcaggagcgagctctgtgctgtggcctggcatgtccttcacatctggatgtga 284
Query: 291 gctccatcatttcactccctcgctgacaca 320
||||||||||||||||||||||||||||||
Sbjct: 283 gctccatcatttcactccctcgctgacaca 254
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no268_d01.g1 MSMg01no268_d01.g1 CHROMAT_FILE:
MSMg01no268_d01.g1 PHD_FILE: MSMg01no268_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:26 2005
(361 letters)
>mm_chr3_101463516_101464275
Length = 760
Score = 605 bits (313), Expect = e-177
Identities = 350/363 (96%), Gaps = 5/363 (1%)
Strand = Plus / Plus
Query: 1 acaccatggaaatgggaatttccataaattctgttgctcctaacactcatcatcaggagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 acaccatggaaatgggaatttccataaattctgttgctcctaacactcatcattaggagc 260
Query: 61 tggagggctagggctgggggctcagtggtcaagcacttgccttgggtttgatcgctaaca 120
||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 261 tggagggctagggct-ggggctcagtggtcaagcgcttgccttgggtttgatcactaaca 319
Query: 121 cagtaaaacaacaacaaaggtaatttattttctatggtttcataactgcacggtcaggtt 180
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 320 cagtaaaacaacaacaaaggtaatttatcctctatggtttcataactgcacggtcaggtt 379
Query: 181 tcttcttgataagaagggacttctggcctgatgaggcatggagagagcaggattaccatc 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 380 tcttcttgataagaagggacttctggcctgatgaggcatggagagatcaggattaccatc 439
Query: 241 ctgcctgtcttgagagaactttccacacgttctctggctcatacatttctgacttgattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgcctgtcttgagagaactttccacacgttctctggctcatacatttctgacttgattt 499
Query: 301 ttccttgactctctagtgtgtctagtgatgtgtgc--cacggggtacatttcacttccac 358
|||||||| |||| |||||||||||||||| | || |||||||||||||||||||||||
Sbjct: 500 ttccttgagtctccagtgtgtctagtgatg-g-gcaccacggggtacatttcacttccac 557
Query: 359 atg 361
|||
Sbjct: 558 atg 560
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 760
Length adjustment: 9
Effective length of query: 352
Effective length of database: 751
Effective search space: 264352
Effective search space used: 264352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
