BAC Information

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BAC

Clone NameMSMg01-268I16
Chromosome3 (Build37)
Map Location 45,944,501 - 45,944,792
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
Downstream geneEG241989, LOC545517, LOC383849
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268I16.T7 (MSMg01no268_i16.b1)MSMg01-268I16.TJ (MSMg01no268_i16.g1)
ACCAG408928AG408929
length733731
length of high quality
(start - end)
314 (46 - 359)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no268_i16.b1 PHD_FILE: MSMg01no268_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:50 2005CHROMAT_FILE: MSMg01no268_i16.g1 PHD_FILE: MSMg01no268_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAACTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGGAGTCCACCTTCGTGAGTTCTTTATATATATCGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCTCAATCTGTTGGTAGTCTT
TTGTCTTATTGATTGTGTCTTTTGCCTTACAGAAGTTTGCAATTTTATGA
GGTCCCATTTGTGGATTCTCGATCTTATCGCACAGCCATTGCTGTTTTGT
TCAGGAATTTTCCCCCTGTGCCTGTATCTTAGAGGCTTTTCCCCACTTTC
TCCTCTGTATATTTTCAGTGTCTCTCGCCCCCCCCGGAGTTCCTCAATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCAATTCACATT
CTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAATGCTG
TCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACC
ATAAGCAAGGCACCCATGGAAGGACCTTCAGAGACAGAGTTTGGAGCTGA
GTCGAAAGAATGGACCATCTAGAGGCTGCCATACCCAGAGATACATACTA
TAATCACCCTCCAAACGCTGACACCGTTGCATACACTAGCAAGATTTTGC
TGAAAGGACCCTGATATAGCTGTCTCATGTGAG
CGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTTTTATCTCGGTACCCCTTTTTT
AATCGGGTTATTTGGTTCTCTTTAGTACCTGTACTTTTACATTTTGACAG
CTAACACTGCAGTAGCATTTCACTTGCTTACTTTTCTCTGTTAGACTGGA
TCTTTTTCTAGTGCTAAGGACTGAACTCCTGCACATGCTCTTCACATGTC
ACATAAATGCTTGGCTGCTCATGGAACAATATCCTCAGCAGGAGTTTATG
GCTTTATTTATGAATTTTTCCGTGCCTCTGGAGATTAAAGCTAAAAACAA
TAATTAAGATTNGTGGGTTTCACCGCTCTNCCGCTAGTCACAGCCATAGA
CCTGGAAAAAACTTATAGGTGAGACTTAAAAATAAACAAGAAGTGTGGAC
CCCCCTACAGAAAGTGTTAGATCTCAACAAGTTCTGCTTTATTATTTATT
CTTCCAGCGTTAGCTTTAAAAGAGCCCCAGATTGAAGCAAGACAAATTAA
TAATGGGAAATTAAGAGAGCTGCAAGTGAAATTCAAGGAGAAAACTAATT
TCAACTCACTTGCTGAACCTAGTTTATTAATTGATGCTAATATTCCTATG
CCAATCTAATAATTATTTTTATAATTACATGGTTCCTATAGTAATTCAGA
ATATTTATGAGAGATACTATTTTCCTGAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_i16.g1 MSMg01no268_i16.g1 CHROMAT_FILE:
MSMg01no268_i16.g1 PHD_FILE: MSMg01no268_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:50 2005
         (284 letters)



>mm_chr3_45944301_45944992
          Length = 692

 Score =  507 bits (262), Expect = e-148
 Identities = 281/292 (96%), Gaps = 8/292 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttttatctcggtaccccttttttaatcgggttatttggttctctttagtacctgtac 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tttttttatctcggtaccccatttttaatcgggttatttggttctctttagtacctgtac 433

                                                                       
Query: 61  ttttacattttgacagctaacactgcagtagcatttcacttgcttacttttctctgttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ttttacattttgacagctaacactgcagtagcatttcacttgcttacttttctctgttag 373

                                                                       
Query: 121 --------actggatctttttctagtgctaaggactgaactcctgcacatgctcttcaca 172
                   ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tccttagcactagatctttttctagtgctaaggactgaactcctgcacatgctcttcaca 313

                                                                       
Query: 173 tgtcacataaatgcttggctgctcatggaacaatatcctcagcaggagtttatggcttta 232
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 312 tgtcacataaatgcttggctgctcatggaacaatatcctcagcaggaggttatggcttta 253

                                                               
Query: 233 tttatgaatttttccgtgcctctggagattaaagctaaaaacaataattaag 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tttatgaatttttccgtgcctctggagattaaagctaaaaacaataattaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 692
Length adjustment: 9
Effective length of query: 275
Effective length of database: 683
Effective search space:   187825
Effective search space used:   187825
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)