BAC Information

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BAC

Clone NameMSMg01-268L20
Chromosome3 (Build37)
Map Location 26,052,668 - 26,052,959
singlet/doubletsinglet
Overlap geneNlgn1
Upstream geneLOC100039592, LOC621017
Downstream geneLOC229152, Spata16, LOC665258, Ect2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268L20.T7 (MSMg01no268_l20.b1)MSMg01-268L20.TJ (MSMg01no268_l20.g1)
ACCAG409066AG409067
length748739
length of high quality
(start - end)
---292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no268_l20.b1 PHD_FILE: MSMg01no268_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:04 2005CHROMAT_FILE: MSMg01no268_l20.g1 PHD_FILE: MSMg01no268_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTATTGTGCTGACTTGCATATCTGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTGCAATATCGCCGCGAGCCACTAG
GGGTACCTTTGTATCATTTTTCATTCTGCACCGATTTGGAGTAGAAACCT
GTATTAGGGGAAAACCAGGGTCCTCGGCATTTTTTTCTTTTCTTTCTTTC
TTTTTTTTCTTTTGCGAGCAGTGCACCCAGAATCCAAAAAGATTTTTAAA
AAATTAAAAAAGGCAGGAAGGAAAGAAGAAAAGGAAAGGAAAGAAAGAAA
CCACAGCCCTTCGGTAACCCGGATAGGGCTATGGAATCGTTCTACTGGAC
ACGAGCACTGGGGATTTTTTTTTGACGCCCCTTCCCCATCGAGATAAATC
TATTGGATTAGTAGGATTATCTGATCGCAGCTCAAAGAAATAACGTTGTT
TGATCGTTTGTATTTCTTGCCTGATGGTAGGAATTACACGGATGCGGCTT
TGGTTCTCCAGGATTCTGGATCCTGGCAGCATCTGGAGAGAAAAAAAGCA
TCAATCCACACGTTTAGGAAGTGTCCGTGGGTGAATAACGAGGGAGGGGG
AGGTGGATCTAGGTTTGCGTGTGCCTACTGACAGAAGATTGAAGTAACGC
AGACGTCTTGTATTCTGAAGTCCAGTCTACCAGTTTCAGAATAGTAATAA
TATATCTGAAATTGGGTATTGCATTGACCGTGTCATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_l20.g1 MSMg01no268_l20.g1 CHROMAT_FILE:
MSMg01no268_l20.g1 PHD_FILE: MSMg01no268_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:04 2005
         (292 letters)



>mm_chr3_26052655_26053346
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgcaatatcgccgcgagccactaggggtacctttgtatcatttttcattctgcaccga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cctgcaatatcgccgcgagccactaggggtacctttgtatcatttttcattctgcaccga 246

                                                                       
Query: 61  tttggagtagaaacctgtattaggggaaaaccagggtcctcggcatttttttcttttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tttggagtagaaacctgtattaggggaaaaccagggtcctcggcatttttttcttttctt 186

                                                                       
Query: 121 tctttcttttttttcttttgcgagcagtgcacccagaatccaaaaagatttttaaaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tctttcttttttttcttttgcgagcagtgcacccagaatccaaaaagatttttaaaaaat 126

                                                                       
Query: 181 taaaaaaggcaggaaggaaagaagaaaaggaaaggaaagaaagaaaccacagcccttcgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 taaaaaaggcaggaaggaaagaagaaaaggaaaggaaagaaagaaaccacagcccttcgg 66

                                                               
Query: 241 taacccggatagggctatggaatcgttctactggacacgagcactggggatt 292
           ||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 65  taacccggatagggctacggaatcgttctactggacgcgagcactggggatt 14


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)