BAC Information

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BAC

Clone NameMSMg01-269B20
Chromosome3 (Build37)
Map Location 72,160,378 - 72,160,900
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667377, LOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269B20.T7 (MSMg01no269_b20.b1)MSMg01-269B20.TJ (MSMg01no269_b20.g1)
ACCAG409333AG409334
length743731
length of high quality
(start - end)		646 (42 - 687)236 (72 - 307)
definitionCHROMAT_FILE: MSMg01no269_b20.b1 PHD_FILE: MSMg01no269_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:30 2005CHROMAT_FILE: MSMg01no269_b20.g1 PHD_FILE: MSMg01no269_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTAAATGATTTATTTATATCTTCTTTAAGGTCCTTGGAAATATTCATA
ATTCCCATTTTGAAGTTCTTGCTGTGTGCTTTACTACATTGAATTTTTCA
GTGCCTAGTGTACAGGGGTGCTGGATTCTTGTGATGGCAAATTGTCTTGG
ATATTATTTTTAGTGCATTTGCACTGTTGTCTGGGGTTGTGATAATTAAT
GTGTTTCTAGGTGTTTACATCAAACTTTTTCTGCAGTTTGAGTGTTTTAT
TTCTTCATTTCCCTTTTGTTCTTGGCATCTTAAGAAACTGCAGTCATTGT
GAGTTGCCTGTTATGGACTGCTAGTGTATGAGAGTGGGTTGATTTGAAAA
TAAAGGCTGAGGAATAGCTAAAGTGATTCTGTTCAAATCTAGGCATATAG
CCCAACAGGATTTGGACATGTGACCACAAAGATCACTTGATACTGCAAGT
CAGTTTAAGGAAGACAAAGAATTATTAGAAAAAGACAGGTATGAAAGAGC
TAGGGGAACTGTGGGTTGGCGCCAAACATTCTAAGTCTCCAGTTAGTGAA
GATGAAGTAGAAAACAGAGCACCTGTAAGCAGGTTTTCAACAGACTGATG
ATGAGAATTGGGGGATCATGATGCAGGGCAAGAAGGATACTGTGAATTAC
TTAGCTGACTCCTTTGACAGTGTGACTACTAGGGGTCCCAGGG

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACTTGAAAAAATGTTCAACATCCTTAATCAACAATATGAACTAACTAG
TACCCCCAGAGCTCTTGACTCTAGCTGCATATGTATCAGAAGATAGCCTA
GTCGGCCATCAGTGGAAAGAGAGGCCCATTGGTAGTGCAAACTTTATATG
CCTCAGTACAGGGGAACGCCAGGGCCAAGAATTGGGAGTGGGTGGGTGGG
GGGAGTGNNNNNNNNNNNNNNTTTTTTTNNNNNNNNNNNNNNNNNNNNNN
NNNTNTTTTTTTTTTTTTCCCCCCCCCCCCCCCCNNNNNNNNTNNNNNNN
NNNNNNNTTTTCCCCCCCCCCCCAAAAAAAAAAAATCTTNCCCTTCCTCC
CACTNCCTTTCATCTTTCACCCCTTAACTTCCTTTCATTTTTTCCCTCTC
TCACTCACACCAACCATTTTCCACCCATTTATAATTATCCTTCATAACTC
TACTACCACCTCAACTATCTTTTCTCCATTCACTTACTACCTATACACAC
CATATTTACCATAACATTTTTTTCCCCCACATTTCTCTTCCCACATTTAA
TTCTTCTCATTCCTCCCCACTATCCACCCCATACATCATCTCCTCCTTTT
TCTCCCTTCCCCTTTCCTCCTAATTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_b20.b1 MSMg01no269_b20.b1 CHROMAT_FILE:
MSMg01no269_b20.b1 PHD_FILE: MSMg01no269_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:30 2005
         (646 letters)



>mm_chr3_72159855_72160900
          Length = 1046

 Score =  988 bits (511), Expect = 0.0
 Identities = 520/523 (99%)
 Strand = Plus / Minus

                                                                        
Query: 124  ggggtgctggattcttgtgatggcaaattgtcttggatattatttttagtgcatttgcac 183
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1046 ggggtgctggattcttgtgatggcaaattgtcttggatattattttttgtgcatttgcac 987

                                                                        
Query: 184  tgttgtctggggttgtgataattaatgtgtttctaggtgtttacatcaaactttttctgc 243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986  tgttgtctggggttgtgataattaatgtgtttctaggtgtttacatcaaactttttctgc 927

                                                                        
Query: 244  agtttgagtgttttatttcttcatttcccttttgttcttggcatcttaagaaactgcagt 303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926  agtttgagtgttttatttcttcatttcccttttgttcttggcatcttaagaaactgcagt 867

                                                                        
Query: 304  cattgtgagttgcctgttatggactgctagtgtatgagagtgggttgatttgaaaataaa 363
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 866  cattgtgagttgcctgttagggactgctagtgtatgagagtgggttgatttgaaaataaa 807

                                                                        
Query: 364  ggctgaggaatagctaaagtgattctgttcaaatctaggcatatagcccaacaggatttg 423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806  ggctgaggaatagctaaagtgattctgttcaaatctaggcatatagcccaacaggatttg 747

                                                                        
Query: 424  gacatgtgaccacaaagatcacttgatactgcaagtcagtttaaggaagacaaagaatta 483
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 746  gacatgtgaccacaaagatcacttgatactgcaagtcagtttaagaaagacaaagaatta 687

                                                                        
Query: 484  ttagaaaaagacaggtatgaaagagctaggggaactgtgggttggcgccaaacattctaa 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686  ttagaaaaagacaggtatgaaagagctaggggaactgtgggttggcgccaaacattctaa 627

                                                                        
Query: 544  gtctccagttagtgaagatgaagtagaaaacagagcacctgtaagcaggttttcaacaga 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626  gtctccagttagtgaagatgaagtagaaaacagagcacctgtaagcaggttttcaacaga 567

                                                       
Query: 604  ctgatgatgagaattgggggatcatgatgcagggcaagaagga 646
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566  ctgatgatgagaattgggggatcatgatgcagggcaagaagga 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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