XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTTCTGTACTGCCTGGAGTGGCAAGTCAATACATGTCTGTGTTAGCTACA
GTCCAATGCCTGCTCTCCAATTAGGGGGCAGAAGAGCAATTGGAATTGGC
GTGGACTGTAATTAGCAAGGAAAATGGTTAGCTGGGGGTGTTTAATCAAA
TGAAAGTCAAAAATGGTAGGGAACTGCATTTTTGTGTAGATTTTGAAGCT
AGACATTCTTAAGATGAAATTGTCAAATAAACCCAGTCTGGCTTTGTGTT
GAAATTCATCAAAAATGGCTTTGTTTGCCTCCCTTTCTGATTGCAACTGT
CAATCACCTGTCCTTAGTTGAATAATTTGCACGATACCAAGAGCAGATTT
TGTGAACAAAATGTCCAAAAAAACATGCGGTAGAGCGAAGAAGTAAAATC
ATAAGGGAAGGCGTTAGTGTACTGGAGCAAATCGCAGCCAAGCTTTCCCG
ATGGCCAGAAGCACACCAGGAGTAGCAATGACACCTTTGCCATGTAAACC
GCAGGGGAAAGTAATTAAATTTAACAGAAGCTGCTCTTGATTTAAAGCCA
CAGGGGAAGTAATTAAATTTAATAGAAGCCACTACTTCTAAACAAAGATA
TATGGTATTTCTATCACCGAATGCTACCCCTGCTACTTGTGCCTATGGAG
TCTAGTGGTCTGCCTTGAAAACCAGATCCAGAACAAGGGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACCCAAGCATAGGGATTTCAGTTGTCTCAA
TGGACGTAGTATCATTTCTCCTAAGGAGAAGACTTAAAACAGGCAGAGAC
TTCAATCCTTAGAAACAACATTTGACTATTCTATGGCTTCCATATCTTTT
AGAAGCCACCAGAGAAAGACACAAGAAAACTTTTCATAACACCAAAAACT
GCACTTTCTACCCTTTCAACATAACAGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTGGTAGTGGNNNNNNNCGNNNNNNN
NNNNTGTTTTTTTTTTTCCCCCCCCCCCCCCCNNGGTGTNNNNGNGGGGT
TGGNGGGTGCCTTGGGCGGGGGACAAAAAACAAATAATGGGGTGGAGGGG
GGGCGTCGAATTGGAATTACATGTGCGTCGAAAGATTGAAGGACGTCAGG
CATAGAGTCAGGCTGCACCCGGGCCGTATTTTGTCGGGCAAATGATTTAG
AAATCGCTTTTATGGCTTTCGAGGAATATGCGTATACGTCGGTAAGCGCA
TCGGTGACTCAGGACTTTTCTTCTGTGGACCTGGCAAGGCGTGGCGGAAA
TGGCGCTCTATTAACTGAATCATTCAGCCAATGCTTGTTGAGTCCTTCTC
TCATTTTGTAAACGCGAATTGATGGAGAGTTCATGGAATTTTCCTGGATG
GATCTTGTTTGCGCGTTCTC

Query= MSMg01no269_g01.b1 MSMg01no269_g01.b1 CHROMAT_FILE:
MSMg01no269_g01.b1 PHD_FILE: MSMg01no269_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:50 2005
         (648 letters)



>mm_chr3_146755469_146756517
          Length = 1049

 Score = 1208 bits (625), Expect = 0.0
 Identities = 643/649 (99%), Gaps = 1/649 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtggcaagtcaatacatgtctgtgttagctacagtccaatgcctgctctc-caattag 59
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 gagtggcaagtcaatacatgtctgtgttagctacagtccaatgcctgctctcacaattag 260

                                                                       
Query: 60  ggggcagaagagcaattggaattggcgtggactgtaattagcaaggaaaatggttagctg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggcagaagagcaattggaattggcgtggactgtaattagcaaggaaaatggttagctg 320

                                                                       
Query: 120 ggggtgtttaatcaaatgaaagtcaaaaatggtagggaactgcatttttgtgtagatttt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggtgtttaatcaaatgaaagtcaaaaatggtagggaactgcatttttgtgtagatttt 380

                                                                       
Query: 180 gaagctagacattcttaagatgaaattgtcaaataaacccagtctggctttgtgttgaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagctagacattcttaagatgaaattgtcaaataaacccagtctggctttgtgttgaaa 440

                                                                       
Query: 240 ttcatcaaaaatggctttgtttgcctccctttctgattgcaactgtcaatcacctgtcct 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 ttcatcaaaaatggctttgtttgcctccctttctgattgcaactgtcaatcacttgtcct 500

                                                                       
Query: 300 tagttgaataatttgcacgataccaagagcagattttgtgaacaaaatgtccaaaaaaac 359
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taattgaataatttgcacgataccaagagcagattttgtgaacaaaatgtccaaaaaaac 560

                                                                       
Query: 360 atgcggtagagcgaagaagtaaaatcataagggaaggcgttagtgtactggagcaaatcg 419
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgcggtagagcgaagaagcaaaatcataagggaaggcgttagtgtactggagcaaatcg 620

                                                                       
Query: 420 cagccaagctttcccgatggccagaagcacaccaggagtagcaatgacacctttgccatg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagccaagctttcccgatggccagaagcacaccaggagtagcaatgacacctttgccatg 680

                                                                       
Query: 480 taaaccgcaggggaaagtaattaaatttaacagaagctgctcttgatttaaagccacagg 539
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 taaaccacaggggaaagtaattaaatttaacagaagctgcccttgatttaaagccacagg 740

                                                                       
Query: 540 ggaagtaattaaatttaatagaagccactacttctaaacaaagatatatggtatttctat 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaagtaattaaatttaatagaagccactacttctaaacaaagatatatggtatttctat 800

                                                            
Query: 600 caccgaatgctacccctgctacttgtgcctatggagtctagtggtctgc 648
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caccgaatgctacccctgctacttgtgcctatggagtctagtggtctgc 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1049
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1039
Effective search space:   662882
Effective search space used:   662882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)