BAC Information

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BAC

Clone NameMSMg01-269G10
Chromosome3 (Build37)
Map Location 132,396,046 - 132,396,418
singlet/doubletsinglet
Overlap geneA630047E20Rik
Upstream geneOlfr375-ps1, Dkk2, LOC100039018, EG433653, LOC668857, Scye1
Downstream geneLOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269G10.T7 (MSMg01no269_g10.b1)MSMg01-269G10.TJ (MSMg01no269_g10.g1)
ACCAG409524AG409525
length734741
length of high quality
(start - end)		666 (40 - 705)366 (71 - 436)
definitionCHROMAT_FILE: MSMg01no269_g10.b1 PHD_FILE: MSMg01no269_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:52 2005CHROMAT_FILE: MSMg01no269_g10.g1 PHD_FILE: MSMg01no269_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACCGGAGGAATACCGAATGGCAGAGAAGCACATGAAAAAATATTCAACA
TCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCT
CACACAAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCT
GGAGAGGATGTAGAGAAAGAGGAACACTCCTCCATTGTTGGTAGGATTGC
AAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTTAGAAAATC
GGACATAGTACTACCGGAGGATCCAGCAATACCTTTTCTGGGCATATATC
CAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATA
GCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTC
AACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACT
ACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGAAG
GACCTGGAGAGCATCATCCTGAGTGAGGTAACCTAATCACAAAGGAACTC
ACAGAATATGTACTCACTGATAAGTGGATATTAGCCCAGAACTTAGAATA
CCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGAAGAAGG
AAGACCAAAGTGTGGACACTTTGCCCCTTCTTAG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTAAAATTATTTACTGCATATATTTTTTG
GGATATCTATTAATAACAGGTTTGGAAAACCTGACAATGTGAGTCTTTCT
AGACTGGAGTATAGTACAGTTCTATTGCACTAATTATGACCATGTGGTAA
AAAGCAACAGGCAATCTTGTAAAGTAACCAAACACATTCAAAGAAATTTG
TAGAATCTCATTAAGAGAATCAAGAATAGAAAAAAAAATTGTGCCAACAG
AGGTCTATAAAGGCAAAAAATAACTAAGGCCACACTATAGGATGGGCCCC
ACACTCAGCAACAGTTGGCTAAGACAAATGCACTCCATGATTTTGTCAGT
CTGTTTTAATTTGGGGGGGGGATTGGGGTGGGTAGGNANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAANANANAAAANA
AAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_g10.g1 MSMg01no269_g10.g1 CHROMAT_FILE:
MSMg01no269_g10.g1 PHD_FILE: MSMg01no269_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:52 2005
         (366 letters)



>mm_chr3_132395876_132396641
          Length = 766

 Score =  638 bits (330), Expect = 0.0
 Identities = 360/374 (96%), Gaps = 10/374 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaaaattatttactgcatatattttttgggatatctattaataacaggtttggaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agtaaaattatttactgcatatattttttgggatatctattaataacaggtttggaaaac 484

                                                                       
Query: 61  ctgacaatgtgagtctttctagactggagtatagtacagttctattgcactaattatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctgacaatgtgagtctttctagactggagtatagtacagttctattgcactaattatgac 424

                                                                       
Query: 121 catgtggtaaaaagcaacaggcaatcttgtaaagtaaccaaacacattcaaagaaatttg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 423 catgtggtaaaaagcaacaggcaatcttgtaaagtaaccaaacacattcacagaaatttg 364

                                                                       
Query: 181 tagaatctcattaagagaatcaagaatagaaaaaaaaattgtgccaacagaggtctataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tagaatctcattaagagaatcaagaatagaaaaaaaaattgtgccaacagaggtctataa 304

                                                                       
Query: 241 aggcaaaaaataactaaggccacactataggatgggccccacactcagcaacagttggct 300
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aggttaaaaataactaaggccacactataggatgggccccacactcagcaacagttggct 244

                                                                       
Query: 301 aagacaaatgcactccatgattttgtcagtctgttttaatttg-------gg-gggggga 352
           |||||||||||||||||||||||||||| ||||||||||||||       || |||||||
Sbjct: 243 aagacaaatgcactccatgattttgtcaatctgttttaatttgagagagaggtgggggga 184

                         
Query: 353 -ttggggtgggtag 365
            ||||| |||||||
Sbjct: 183 attggg-tgggtag 171


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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