BAC Information

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BAC

Clone NameMSMg01-269H10
Chromosome3 (Build37)
Map Location 88,686,342 - 88,836,584
singlet/doubletdoublet
Overlap gene5830417I10Rik, Msto1, Dap3, Ash1l
Upstream genePrcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11
Downstream geneRusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269H10.T7 (MSMg01no269_h10.b1)MSMg01-269H10.TJ (MSMg01no269_h10.g1)
ACCAG409571AG409572
length733730
length of high quality
(start - end)
227 (433 - 659)289 (70 - 358)
definitionCHROMAT_FILE: MSMg01no269_h10.b1 PHD_FILE: MSMg01no269_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:56 2005CHROMAT_FILE: MSMg01no269_h10.g1 PHD_FILE: MSMg01no269_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:56 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(88,686,342 - 88,686,568)(88,836,297 - 88,836,584)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCC
TCCTGTTTGCTGGGATCCCAGGCGTGCGCCACCACAGCCAGCTAAACCCC
AATTTTTGAAGTGAAACTTTTTTACTATGAAAATGAAATTATTAATCGTA
GTGTACCATTATCATGGGGATTTTTAGTGTGACTTAGTTTATCCTAATAG
CTAAAGTTCAACAAAGGGAGCTAGAAAAATCAGCCAGATTTCTGGTGTTG
TGACCCTGGAATTGATAAATCTTCTTTTTCAAATATAATTATTAAACACA
TGTTGTTATTGGNCTCCATTTTCTAGACCCCCTGGTGTTGAAAAGTTAAC
AAAGATCTAACCACCTAAAATAAAAGAAAATAATCTAAGTATATATGTTT
ATAATCTTATTTTTATCATCATGCAAAAGTCAATACTAATCCAAAATATT
TTGTAGACTTGTTGTTTTCTTCCTCTAAAAAGAATCGGCAATAAACTGAG
GGCTCAGCAGGACTTATGCCCTGTGGTCATCTTAAGATGGTGACAACATA
GTACATGTACCTTCCTTTAACCTTAGTGAATACGGCAGTCAGCCATGCAG
CTTCTTACATTTTGATGAGGTCATCAGGTATGATGGAAGAGAGTCATGTG
GTTGGGTGCTAATAAATAACTTTTTTTACACAG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTATCCCTGGAGCAAACATGCTGGAAGAAAGA
AACTGAACTTCTACGATTGCTCTTTTGCTTTCATGCAGCACTGTGAAACA
TATATTCCCACATACAAAATTAAATAATAAAAAATAAACAAAAGAAAAGG
GGCATACTTGAATTTACATAACTGAAGAATACATGTCACCCATGAAATGG
CTCAGCAGGTAAGATACCTTGAGCCTGGATCTCAAATTCATGGTGGAAGG
AGAAGCAGCTCCTGAACGATGGCCTCTGACATATTATATATATGAAGAAA
GGGCTCATGCTTAAGACTGCCCACTAGTCTCTAAAGCTCCTGAACTTGAC
AATTATATGTAACTCCAGCTTCAGAGAATCTGACATCCCTTTCTGGCTGC
TGAACACGTAATATACTCACATATAGACACAAACACCCCACTTTAGTCAC
AGCACTGAGGAGGCAGAGGCAGGGGCAGGCAGAGCTCCTTGAGTTTGAGG
CCAGGCTACACAAGGTAGGGAAAAAGTATATATAAATAGATTTAAGATGC
TAGTAACATTTTCCTGCACCTTGAACTATTATTTTCTTTTTTCACTTCTT
TTTTTTCCTTCCTTTCTCTCTCTTTTTTTCTTTTGGAGACAGAGTTCCTC
TTGTGTAGTCCTGGCTGTCCTGAAACTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_h10.b1 MSMg01no269_h10.b1 CHROMAT_FILE:
MSMg01no269_h10.b1 PHD_FILE: MSMg01no269_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:56 2005
         (227 letters)



>mm_chr3_88686142_88686768
          Length = 627

 Score =  408 bits (211), Expect = e-118
 Identities = 223/227 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctaagtatatatgtttataatcttatttttatcatcatgcaaaagtcaatactaatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctaagtatatatgtttataatcttatttttatcatcatgcaaaagtcaatactaatcc 260

                                                                       
Query: 61  aaaatattttgtagacttgttgttttcttcctctaaaaagaatcggcaataaactgaggg 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatgttttgtagacttgttgttttcttcctctaaaaagaatcggcaataaactgaggg 320

                                                                       
Query: 121 ctcagcaggacttatgccctgtggtcatcttaagatggtgacaacatagtacatgtacct 180
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcagcaggacttattacctgtggtcatcttaagatggtgacaacatagtacatgtacct 380

                                                          
Query: 181 tcctttaaccttagtgaatacggcagtcagccatgcagcttcttaca 227
           |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 tcctttaaccttagtgaagacggcagtcagccatgcagcttcttaca 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no269_h10.g1 MSMg01no269_h10.g1 CHROMAT_FILE:
MSMg01no269_h10.g1 PHD_FILE: MSMg01no269_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:56 2005
         (289 letters)



>mm_chr3_88835978_88836666
          Length = 689

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatccctggagcaaacatgctggaagaaagaaactgaacttctacgattgctcttttgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tatccctggagcaaacatgctggaagaaagaaactgaacttctacgattgctcttttgct 548

                                                                       
Query: 61  ttcatgcagcactgtgaaacatatattcccacatacaaaattaaataataaaaaataaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttcatgcagcactgtgaaacatatattcccacatacaaaattaaataataaaaaataaac 488

                                                                       
Query: 121 aaaagaaaaggggcatacttgaatttacataactgaagaatacatgtcacccatgaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aaaagaaaaggggcatacttgaatttacataactgaagaatacatgtcacccatgaaatg 428

                                                                       
Query: 181 gctcagcaggtaagataccttgagcctggatctcaaattcatggtggaaggagaagcagc 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gctcagcaggtaaaataccttgagcctggatctcaaattcatggtggaaggagaagcagc 368

                                                           
Query: 241 tcctgaacgatggcctctgacatattatatatatgaagaaagggctca 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcctgaacgatggcctctgacatattatatatatgaagaaagggctca 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)