BAC Information

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BAC

Clone NameMSMg01-269O17
Chromosome3 (Build37)
Map Location 89,738,961 - 89,739,560
singlet/doubletsinglet
Overlap genenone
Upstream geneDap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra
Downstream geneAtp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269O17.T7 (MSMg01no269_o17.b1)MSMg01-269O17.TJ (MSMg01no269_o17.g1)
ACCAG409902AG409903
length731730
length of high quality
(start - end)		692 (40 - 731)292 (71 - 362)
definitionCHROMAT_FILE: MSMg01no269_o17.b1 PHD_FILE: MSMg01no269_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:28 2005CHROMAT_FILE: MSMg01no269_o17.g1 PHD_FILE: MSMg01no269_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAATCCGCGGAATT
CCCCCAAATACCAAGCCAACAATCTAACAAACATGCAGGGGATCTAGCAC
AGATGGATGCAGGCTCCACACGATTGCCACTTCAGTCTCTGAGCTCCTAC
ACACCCTGTTTAGGTGATGCTGAGGGCCATACCCTCCTGGTGTCCTCCAC
CCCTCTGGCTCCCATAATTTCCTTCTCCTCTCATGCATGCTTCCCCAAGC
TCTGAGGGTGAGGGACTCATTGGAGACCTCCAAGCTGGGCTCTCTTTTCT
AATATTTGACTATGAGTATCCACTCCCATCAGCCTCTCTCAGTCTGCCAC
TCGGGGCAGGCCTAGGAGGCCTGAGCCATTTTAGGGAAGATCTCTCTTTT
GTCTCCCAAGCGTCAATGGAAGAGATGAACACACTAGGTTTGCTCAGTAT
CTCGCAGGAGGTGAGGCAGAAGGTGAGGATGTGGCTGCTGGTGGAAGGAA
CCAACCTGTCCCTTCTGCCAGGATGTAGGGCTGCTGGGCATCCCCTAGCC
ACACTGGGGTGGGGGATGCTGGCCAGGTGCCTCTGCTGGTGCAGGAAGAA
GCGGGCAGCTGGTAGTCCACTTACAAAGCGGTAGGGGAGAGAGGTCACTG
GCCCTGGCTTCTCCAGAGTTAAGGAGAACATTGCACTTCCACTTTGATTC
CTGGTCTCTTCCTCACCTGTGGCACTGTGCN

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTTATTTGTAGGCCTAGACCTTCTGGTGC
AGAATTCAGCATTACAGTAAATAGCAAGAGGCTAAACCTCAACAATTGCT
TTGTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TCTCTTTCTCTCTTTCTCTCTTTCTCTCTCTCTCTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTTTTTTCTGTGACTAGGCCTCCTGCAGCCCAGGTTGGCCTTGCGCTCA
GTAGGTAGTCAAAGATGGCCTTAAAGACTTGATAGTCCAGCCTTTAACTT
CCATGTTCAACTTCCACATTCTGGGGTTACTTGCTTGCACCATAGACCCA
GCTACAATGTTACATATTAAAAGAGAAATATTTTCCTCTAAAATGTCCCC
AGCTGTAGGAGGAAACAACTGCTTTAGCTGCAAATACTCTGAATAAAGCT
AAAAGTAGCTAATAAAATACTTAGGAATGAGTGAAGACGTTTATGGGAAA
AACTGGACACAGACTGTTCACCCAAACTTCCCATTGAACCATGGAAATAT
ATATAGTCTTTTGGACTAGGACAGGCACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_o17.b1 MSMg01no269_o17.b1 CHROMAT_FILE:
MSMg01no269_o17.b1 PHD_FILE: MSMg01no269_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:28 2005
         (692 letters)



>mm_chr3_89738467_89739560
          Length = 1094

 Score = 1065 bits (551), Expect = 0.0
 Identities = 588/601 (97%), Gaps = 4/601 (0%)
 Strand = Plus / Minus

                                                                        
Query: 94   cagtctctgagctcctacacaccctgtttaggtgatgctgagggccataccctcctggtg 153
            ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1094 cagtctctgagctcctatacaccctgcttaggtgatgctgagggccataccctcctggtg 1035

                                                                        
Query: 154  tcctccacccctctggctcccataatttccttctcctctcatgcatgcttccccaagctc 213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 tcctccacccctctggctcccataatttccttctcctctcatgcatgcttccccaagctc 975

                                                                        
Query: 214  tgagggtgagggactcattggagacctccaagctgggctctcttttctaat-atttgact 272
            |||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| ||
Sbjct: 974  tgagggtgagggactcattggagagctccaagctgggctctcttttctaatga-ttggct 916

                                                                        
Query: 273  atgagtatccactcccatcagcctctctcagtctgccactcggggcaggcctaggaggcc 332
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915  gtgagtatccactcccatcagcctctctcagtctgccactcggggcaggcctaggaggcc 856

                                                                        
Query: 333  t--gagccattttagggaagatctctcttttgtctcccaagcgtcaatggaagagatgaa 390
            |  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 855  taggagccattttagggaagatctctcttttgtctcccaagcgtcaatggaagaaatgaa 796

                                                                        
Query: 391  cacactaggtttgctcagtatctcgcaggaggtgaggcagaaggtgaggatgtggctgct 450
            ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 795  cacgctaggtttgctcagtatctctcaggaggtgaggcagaaggtgaggatgtggctgct 736

                                                                        
Query: 451  ggtggaaggaaccaacctgtcccttctgccaggatgtagggctgctgggcatcccctagc 510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735  ggtggaaggaaccaacctgtcccttctgccaggatgtagggctgctgggcatcccctagc 676

                                                                        
Query: 511  cacactggggtgggggatgctggccaggtgcctctgctggtgcaggaagaagcgggcagc 570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675  cacactggggtgggggatgctggccaggtgcctctgctggtgcaggaagaagcgggcagc 616

                                                                        
Query: 571  tggtagtccacttacaaagcggtaggggagagaggtcactggccctggcttctccagagt 630
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 615  tggtagtccacttacaaagcagtaggggagagaggtcactggccctggcttctccagagt 556

                                                                        
Query: 631  taaggagaacattgcacttccactttgattcctggtctcttcctcacctgtggcactgtg 690
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555  taaggagaacattgcacttccactttgattcctggtctcttcctcacctgtggcactgtg 496

             
Query: 691  c 691
            |
Sbjct: 495  c 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1094
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1084
Effective search space:   739288
Effective search space used:   739288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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