Query= MSMg01no269_o21.b1 MSMg01no269_o21.b1 CHROMAT_FILE:
MSMg01no269_o21.b1 PHD_FILE: MSMg01no269_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:29 2005
(254 letters)
>mm_chr3_101691189_101691845
Length = 657
Score = 427 bits (221), Expect = e-124
Identities = 244/253 (96%), Gaps = 3/253 (1%)
Strand = Plus / Minus
Query: 1 taagcaatgagatgggacagatagtaatttccagagtagttaagtaatctgtcaaatagg 60
||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct: 453 taagcaatgagatgggacagatagtaatttccagagtagttaaataagctgttaaatagt 394
Query: 61 ctggtttgag---aaaacctcagagtatatgtttgagttaagatttggatgaataggaaa 117
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 393 ctggtttgagaaaaaaacctcagagtatatgtttgagttaagatttagatgaataggaaa 334
Query: 118 acctgagcacgtgcaattcaggaaacgaaattcctgacgttggaatggcaaggaccaagg 177
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 333 acctgagcacgtgcaattcaggaaacgaaattcctgaagttggaatggcaaggaccaagg 274
Query: 178 cctgaggtcctactagggtgcagtaggaaaaggtgaaagaaggggtgggggagagaggaa 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cctgaggtcctactagggtgcagtaggaaaaggtgaaagaaggggtgggggagagaggaa 214
Query: 238 tgagaagggggtg 250
|||||||||||||
Sbjct: 213 tgagaagggggtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 657
Length adjustment: 9
Effective length of query: 245
Effective length of database: 648
Effective search space: 158760
Effective search space used: 158760
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no269_o21.g1 MSMg01no269_o21.g1 CHROMAT_FILE:
MSMg01no269_o21.g1 PHD_FILE: MSMg01no269_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:29 2005
(293 letters)
>mm_chr3_101501973_101502664
Length = 692
Score = 520 bits (269), Expect = e-152
Identities = 287/293 (97%), Gaps = 1/293 (0%)
Strand = Plus / Plus
Query: 1 tggtcccatgtaggtggatgtcttcatctttgtctgtgtctcccagttcctattctcact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtcccatgtaggtggatgtcttcatctttgtctgtgtctcccagttcctattctcact 260
Query: 61 ttaaggaagcttccgccctcagcatcggttcctatggttgggctgaatctgattccacct 120
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 261 ttaaggaagcttccgccctcagcattggttcctatggttgggctgattctgattccacct 320
Query: 121 cccagatctgtttggcacaagacccccttaaccttgtctttctgcctcctggccactatc 180
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 cccagatctgtttagcacaagaccccctcaaccttgtctttctgcctcctggccactatc 380
Query: 181 ccttgttcacagatgtgaagaggaccctagtcagtccaacaaaagcattaaggttgtgct 240
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 381 ccttgttcacagatgtgaagagggccctagtcagtc-aacaaaagcattaaggttgtgct 439
Query: 241 aagacctcaatcaaaagccatctgccgagccccatcaacccactgaatctaaa 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagacctcaatcaaaagccatctgccgagccccatcaacccactgaatctaaa 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 692
Length adjustment: 9
Effective length of query: 284
Effective length of database: 683
Effective search space: 193972
Effective search space used: 193972
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
