BAC Information

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BAC

Clone NameMSMg01-269P05
Chromosome3 (Build37)
Map Location 60,453,161 - 60,453,449
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1
Downstream geneLOC676933, LOC100040501, EG666853, P2ry1, Rap2b, LOC666891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269P05.T7 (MSMg01no269_p05.b1)MSMg01-269P05.TJ (MSMg01no269_p05.g1)
ACCAG409925AG409926
length740736
length of high quality
(start - end)
---290 (70 - 359)
definitionCHROMAT_FILE: MSMg01no269_p05.b1 PHD_FILE: MSMg01no269_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:30 2005CHROMAT_FILE: MSMg01no269_p05.g1 PHD_FILE: MSMg01no269_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGACTGCAGGATATTTCAAGAGAAGCTTTA
TGTAGGCCTAATGACTCTCCAGACCAAAATCATTTGTTCCCAATTAATGA
GTATTGTCCATGATTGGCAAAATGTGGTGGTGAATTCAGTGACCTTTGGT
CGAATGAGCATTAAGATTGTTGGTCGAATATGCAGATCTGAGGAAGTATG
TGCTCACTGCTGTTCTAAGGACTGAACACAGCATGCAAGCAGGGGTGAAA
ACACTCAGGGAAATTCTCCTTTTGACTTCATGTGGAGGAGGAAGATAAAC
AGAATCCTTAATGATTCCNAAGCTTNTGCCCAGGTTAACAGAATGCAGCA
TGGTGGGTGAAGGGGAAATAGTAAACTTCATCAAATTGAAGAACTTGTGG
AATAAAGGAGAGATAAGTACTTCTTAGCTTGAAAGATTTTTTTTTTCTTG
GAAGATTTATATCAAGCAGTTAGGATCTAATGGTTTTTGTTTTGTTTTGT
TTTGTTGGATTTTGGGGGTTGTTTCTTCTTTCGCATTATTCTTTATCACT
ATCATTATTCTTTATTTCCCTTTCACAATTTTTCATTCCCATTTTCTTCG
TCCAATAATTATTTTCTTTTACATCTCTTTTTTTTATATTAGCTTAATCC
CTCCTATACTTTTTCTTTTTCCACTCTAACTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_p05.g1 MSMg01no269_p05.g1 CHROMAT_FILE:
MSMg01no269_p05.g1 PHD_FILE: MSMg01no269_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:30 2005
         (290 letters)



>mm_chr3_60452961_60453650
          Length = 690

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagactgcaggatatttcaagagaagctttatgtaggcctaatgactctccagaccaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagactgcaggatatttcaagagaagctttatgtaggcctaatgactctccagaccaaaa 260

                                                                       
Query: 61  tcatttgttcccaattaatgagtattgtccatgattggcaaaatgtggtggtgaattcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatttgttcccaattaatgagtattgtccatgattggcaaaatgtggtggtgaattcag 320

                                                                       
Query: 121 tgacctttggtcgaatgagcattaagattgttggtcgaatatgcagatctgaggaagtat 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacctttggtcgaatgagcataaagattgttggtcgaatatgcagatctgaggaagtat 380

                                                                       
Query: 181 gtgctcactgctgttctaaggactgaacacagcatgcaagcaggggtgaaaacactcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgctcactgctgttctaaggactgaacacagcatgcaagcaggggtgaaaacactcagg 440

                                                            
Query: 241 gaaattctccttttgacttcatgtggaggaggaagataaacagaatcct 289
           ||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaattctcccattgacttcatgtggaggaggaagataaacagaatcct 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)