Query= MSMg01no270_b18.b1 MSMg01no270_b18.b1 CHROMAT_FILE:
MSMg01no270_b18.b1 PHD_FILE: MSMg01no270_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:41 2005
(321 letters)
>mm_chr3_25025585_25026303
Length = 719
Score = 563 bits (291), Expect = e-165
Identities = 310/317 (97%), Gaps = 2/317 (0%)
Strand = Plus / Minus
Query: 5 gaattcaacaatctctaaacaagaaatagcactaggctgaggaaactatcacgtttgtgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcaacaatctctaaacaagaaatagcactaggctgaggaaactatcacgtttgtgt 460
Query: 65 gagagtgctacacactgatatacttcattataagaccataatacacttcagaaaccagct 124
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 459 --gagtgctacacactgatatgcttcattataagaccataatacacttcagaaaccagct 402
Query: 125 gattttggtgactttaggtgtgctgcttcttggtgtctttattgacaattccctaggacg 184
||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct: 401 gatcttggtgactttaggtgtgttacttcttggggtctttattgacaattccctaggacg 342
Query: 185 tgcaggcttcattttggaggctgagtccactaactaggttaactccttttaaagtgtttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgcaggcttcattttggaggctgagtccactaactaggttaactccttttaaagtgtttt 282
Query: 245 agatttatgacagatgtgttttctttaaggaaggactgattgcatgaaccagtggctaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 agatttatgacagatgtgttttctttaaggaaggactgattgcatgaaccagtggctaaa 222
Query: 305 aatacttctcatacttg 321
|||||||||||||||||
Sbjct: 221 aatacttctcatacttg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 719
Length adjustment: 9
Effective length of query: 312
Effective length of database: 710
Effective search space: 221520
Effective search space used: 221520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_b18.g1 MSMg01no270_b18.g1 CHROMAT_FILE:
MSMg01no270_b18.g1 PHD_FILE: MSMg01no270_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:42 2005
(648 letters)
>mm_chr3_24824268_24825320
Length = 1053
Score = 1207 bits (624), Expect = 0.0
Identities = 644/653 (98%), Gaps = 5/653 (0%)
Strand = Plus / Plus
Query: 1 tcataaaataagtacaagctactcatggttttcacaaagaatgcatgtggacacatatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcataaaataagtacaagctactcatggttttcacaaagaatgcatgtggacacatatgc 260
Query: 61 acatacacacacacatacacacagacacatacacacagacatatacacacagagagagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatacacacacacatacacacagacacatacacacagacatatacacacagagagagca 320
Query: 121 gtatagaaaaatcaactgaagcctagaatttttaaattctagt--aaaaaaaatgagcat 178
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 321 gtatagaaaaatcaactgaagcctagattttttaaattctagtaaaaaaaaaatgagcat 380
Query: 179 ttgcgttaaaaattctatctt---aacgtatttcatgaccaaaataacagagagtattcc 235
|||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ttgcattaaaaattctatcttaagaacgtatttcatgaccaaaataatagagagtattcc 440
Query: 236 taccccatccttttactaataagttcggagtaaatttaggaaaaatagtattaaataaaa 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taccccatccttttactaataagttcggagtaaatttaggaaaaatagtattaaataaaa 500
Query: 296 agctcacaaacacccttcaaatccttgcatttcacacacaagctactttcattaggatgg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctcacaaacacccttcaaatccttgcatttcacacacaagctactttcattaggatgg 560
Query: 356 cagtacataaaatagggaatgtgctgggtgtatttttcagcagattagctgtcctaatta 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtacataaaatagggaatgtgctgggtgtatttttcagcagattagctgtcctaatta 620
Query: 416 cattttgctaggctaatgttaaaattagtttcaattccctaagtactcatcagttgatca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattttgctaggctaatgttaaaattagtttcaattccctaagtactcatcagttgatca 680
Query: 476 cagagagagcaggcttgcaacttcctaggtactggaaagaaaccacctacaattaaagat 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagagagagcaggcttgcaacttcctaggtactggaaagaaaccacctacaattaaagat 740
Query: 536 gtagataatttaatctgtaataacagtgcatatagatagggtgaattaggtgctcatcaa 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtagataatttaatctgtaataacagtgcatatagatagggtgaattaggtgctcatcaa 800
Query: 596 ctcttaaactcccgtagattatctacagaaaaaaatcatataanatatctaag 648
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 801 ctcttaaactcccgtagattatctacagaaaaaaatcatataaaatatctaag 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1053
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1043
Effective search space: 665434
Effective search space used: 665434
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
