Query= MSMg01no270_d15.b1 MSMg01no270_d15.b1 CHROMAT_FILE:
MSMg01no270_d15.b1 PHD_FILE: MSMg01no270_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:50 2005
(674 letters)
>mm_chr3_156707999_156709072
Length = 1074
Score = 1125 bits (582), Expect = 0.0
Identities = 648/674 (96%), Gaps = 10/674 (1%)
Strand = Plus / Plus
Query: 5 gaattctactatttttttgtttgtgctttgagaattttatacacacatacaatgtattta 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctactacttttttgtttgtgctttgagaattttatacacacatacaatgtattta 264
Query: 65 tgtcagcttatcctcacttctcacttctccaaattttgaactctatcccacggtgctctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 tgtcagcttatcctcacttctcacttctccaaattttgaactctatcccacagtgctctc 324
Query: 125 taaagttcataactttctaaatatatttttatctcactgagtccactctcatgtgcatga 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 taaagttcataactttctaaatatatttttatctcactgagttcactctcatgtgcatga 384
Query: 185 atgtgaggccatctattggggcatgatcagcctaccagaagtcacaaccagtaacaaacc 244
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 385 atgtgaggccatctattggggcatgatcagcctaccagacgtcacaaacagtaacaaacc 444
Query: 245 tgactctccctcccccagaagagaactgtccaccatgcctcagttgggattggtacctct 304
||||||||||||||||||||||||| ||| ||||||||||| | ||||| ||||||||||
Sbjct: 445 tgactctccctcccccagaagagaattgtgcaccatgcctcggctgggagtggtacctct 504
Query: 305 ttccactgagttatttt----attgtttgactttatcttgtgcagacaatcacagctgct 360
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttccactgagtta----gcacattgtttgactttatcttgtgcagacaatcacagctgct 560
Query: 361 gtgagctcacctctgagacggtgcttcactccacctttcctgctctctaggtcttaagct 420
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 gtgagctcacctctgagagggtgcttcactccacctttcctgccctctaggtcttaagct 620
Query: 421 ctttctacgctctcttctgtcatggtcccttagccttagaggagggcgtgtgatatacag 480
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 621 ctttctacgctctcttctgtcatggtcccttagccttggagaagggcgtgtgatatacag 680
Query: 481 gtagggctgaagactgaaccctacagttatttttgaa-gcttaagctctttataattact 539
|||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct: 681 gtagggctgaagactgaaccctacagttatttgtgaatg-ttaagctctttataattact 739
Query: 540 gacacatgagcttgttttatagacaccttcatgattagaatagagcagaagtctgatcat 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gacacatgagcttgttttatagacaccttcatgattagaatagagcagaagtctgatcat 799
Query: 600 tgtctaatgtgagtctccctgtttttctccttgttcacatgtatgcacagtaaagcaccg 659
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 800 tgtctaatgtgagtctccctgtttttatccttgttcacatgtatgcacagtaaagcaccg 859
Query: 660 aaatttcaaaggca 673
||||||||||||||
Sbjct: 860 aaatttcaaaggca 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_d15.g1 MSMg01no270_d15.g1 CHROMAT_FILE:
MSMg01no270_d15.g1 PHD_FILE: MSMg01no270_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:50 2005
(668 letters)
>mm_chr3_156898998_156900065
Length = 1068
Score = 1230 bits (636), Expect = 0.0
Identities = 660/668 (98%)
Strand = Plus / Minus
Query: 1 caggcatcagagtctatttgattaaccaagccatacttgttaaaatactctacaaaagaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 868 caggcatcagagtctatttgattaaccaagccatacttgttaaaatactctaaaaaagaa 809
Query: 61 gcatgtatgtgaaatatattaattccccatgtaccttacagcctttgtttcataattgtg 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 gcgtgtatgtgaaatatattaattccccatgtaccttacagcctttgtttcataattgtg 749
Query: 121 cctgtgcactgctttcaattgctcactgcaagatcaatacaacagagtagaaagtttagg 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cccgtgcactgctttcaattgctcactgcaagatcaatacaacagagtagaaagtttagg 689
Query: 181 ttgtatgcactcagcagcattgatgggtcagtctttaagttgaagtaatatttttaacat 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 688 ttgtatgcactcagcagcattgatgggccagtctttaagttgaagtaatatttttaacat 629
Query: 241 atttttctctttgtcactcatgcttggatgtttgtaataaattattgataaaactgaagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atttttctctttgtcactcatgcttggatgtttgtaataaattattgataaaactgaagc 569
Query: 301 tatggttgtgctgacagcaagtgaattgaaaaatggcgtctgtgtgctaacactcttacc 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 568 tatggttgtgctgacagcaagtgaatcgaaaaatggcgtctgtgtgctaacactcttacc 509
Query: 361 tttacaaagtatcagaatgctgcgtccctgtgctaacactctaatgcttgcagagtgtca 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 508 tttacaaagcatcagaatgctgcgtccctgtgctaacactctaatgcttgcagagagtca 449
Query: 421 gaatgttgtgtctgtatgcacttgcaaatatcagcagctgcgttttcactgaggaaacag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaatgttgtgtctgtatgcacttgcaaatatcagcagctgcgttttcactgaggaaacag 389
Query: 481 aggctcatcaacccactgccaaataacaacacagaaaatatcataaggattttccccttt 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 388 aggctcatcaacccactgccaaataacaacacagaaaatatcataaggattttccctttt 329
Query: 541 cttgtgcattcaaacttaaactggccagattattgtggtttgtattataacaccatagta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cttgtgcattcaaacttaaactggccagattattgtggtttgtattataacaccatagta 269
Query: 601 tagtatattctggtgatataggcagactattagaaatgagtaaaaagttggaattactga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tagtatattctggtgatataggcagactattagaaatgagtaaaaagttggaattactga 209
Query: 661 aattttag 668
||||||||
Sbjct: 208 aattttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
