Query= MSMg01no270_n05.b1 MSMg01no270_n05.b1 CHROMAT_FILE:
MSMg01no270_n05.b1 PHD_FILE: MSMg01no270_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:34 2005
(667 letters)
>mm_chr3_52768737_52769802
Length = 1066
Score = 1214 bits (628), Expect = 0.0
Identities = 655/664 (98%), Gaps = 1/664 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagggcatagacatgcacattcttctttgtaaatcttgttatttttgccctctg 63
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ggaattcagggcagaga-atgcacattcttctttgtaaatcttgttatttttgccctctg 808
Query: 64 gaggaagcagactggccaagtgcctccagcctgtgacttctcagattcaaacgacatgga 123
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gaggaagcagactggcgaagtgcctccagcctgtgacttctcagattcaaacgacatgga 748
Query: 124 ggtgagaagatacatagagcccaggggtcctgaggaatcagagggataaatctcagctga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ggtgagaagatacatagagcccaggggtcctgaggaatcagagggataaatctcagctga 688
Query: 184 tgcctctgagagaccgagagacagccaggggccgttgaatagactctttcagactcctcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tgcctctgagagaccgagagacagccaggggccgttgaatagactctttcagactcctcc 628
Query: 244 tgtggctccatcaaagcagagcctcactgggagtctgtcctgagctcacctcataaatgg 303
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 627 tgtggctccatcaaagcagagcctcactgggagtctgacctgagctcacctcataaatgg 568
Query: 304 gtctctgatgtcataatttggaacccccatcttgatttcacccctaataactgacctatc 363
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtctctgatgtcataaaaaggaacccccatcttgatttcacccctaataactgacctatc 508
Query: 364 atgaatgaatactctaagaatgttctagaatctagtaaataaatagtctatacagatctc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atgaatgaatactctaagaatgttctagaatctagtaaataaatagtctatacagatctc 448
Query: 424 atcctacattaagtcaaattaacaaccatttacgcagcagggcccatgaaaagtctcaat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atcctacattaagtcaaattaacaaccatttacgcagcagggcccatgaaaagtctcaat 388
Query: 484 atttcctgatttggataaattttcaggcagctgatgaacgagtttataactgtgtcgggt 543
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 387 atttcctgatttggataaattttcaggcagctgatgaacaagtttataactgtgtcgggt 328
Query: 544 ctctgagataccgattaatctcttgtagtataaatgcacatgatataccaagaatatctc 603
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 327 ctctgagataccgattaatctcttgtagtataaatgcacatgatatactaagaatatctc 268
Query: 604 agaaagttgaacgactttggacttaggggtgcatcaagttcaaaccagaaattcaaacta 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agaaagttgaacgactttggacttaggggtgcatcaagttcaaaccagaaattcaaacta 208
Query: 664 gaac 667
||||
Sbjct: 207 gaac 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1066
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1056
Effective search space: 693792
Effective search space used: 693792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_n05.g1 MSMg01no270_n05.g1 CHROMAT_FILE:
MSMg01no270_n05.g1 PHD_FILE: MSMg01no270_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:35 2005
(670 letters)
>mm_chr3_52587350_52588421
Length = 1072
Score = 1284 bits (664), Expect = 0.0
Identities = 670/672 (99%), Gaps = 2/672 (0%)
Strand = Plus / Plus
Query: 1 tcttccacctgaaaatcatgtagactggaactcagctaaacgtaaccccttggaagcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttccacctgaaaatcatgtagactggaactcagctaaacgtaaccccttggaagcaca 260
Query: 61 gttgagaagcaccaagacatgttgcttctgaggaggatcctagaaaattgtaggacagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgagaagcaccaagacatgttgcttctgaggaggatcctagaaaattgtaggacagta 320
Query: 121 tttataccttaaaaaaaa-cacccttcttaaaatgtctagaggcatcttatacaaaatat 179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttataccttaaaaaaaatcacccttcttaaaatgtctagaggcatcttatacaaaatat 380
Query: 180 aggagtaccacaaaaggaactggatttggacgtgttcatactttgtaagtgacggatgca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagtaccacaaaaggaactggatttggacgtgttcatactttgtaagtgacggatgca 440
Query: 240 gagggagacaaatttttactttattttctgcatatttttaaattactattatttgtagaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagggagacaaatttttactttattttctgcatatttttaaattactattatttgtagaa 500
Query: 300 tatgctttaaataatgaaaaaggtataagtataatgatataacctttaaagctaaatact 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgctttaaataatgaaaaaggtataagtataatgatataacctttaaagctaaatact 560
Query: 360 acaagctgccctcgtagtctgtatagctctgagttattaatgtagctatttagcatctcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaagctgccctcgtagtctgtatagctctgagttattaatgtagctatttagcatctcc 620
Query: 420 taacaggaagacagtcatgtatacaatagaaaccaggcaccacatagcaatttctttaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taacaggaagacagtcatgtatacaatagaaaccaggcaccacatagcaatttctttaaa 680
Query: 480 gatttaaataggaatggaaggaaaggaagaaatgtggccttaaaacagtcttctacattt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatttaaataggaatggaaggaaaggaagaaatgtggccttaaaacagtcttctacattt 740
Query: 540 ttttt-cacaaatcactttctttaaaaaattgctttcatatgaaaccatctaattttctg 598
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttttcacaaatcactttctttaaaaaattgctttcatatgaaaccatctaattttctg 800
Query: 599 catctaaatattttgaagtattgtatagaataataataccaactagcaatttactagagg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 catctaaatattttgaagtattgtatagaataataataccaactagcaatttactagagg 860
Query: 659 agcagcctgcgg 670
||||||||||||
Sbjct: 861 agcagcctgcgg 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1072
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1062
Effective search space: 700920
Effective search space used: 700920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
