BAC Information

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BAC

Clone NameMSMg01-270N08
Chromosome3 (Build37)
Map Location 114,843,325 - 114,843,640
singlet/doubletsinglet
Overlap genenone
Upstream geneCol11a1, LOC100043220, Olfm3
Downstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270N08.T7 (MSMg01no270_n08.b1)MSMg01-270N08.TJ (MSMg01no270_n08.g1)
ACCAG410558AG410559
length735746
length of high quality
(start - end)
323 (41 - 363)670 (74 - 743)
definitionCHROMAT_FILE: MSMg01no270_n08.b1 PHD_FILE: MSMg01no270_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:35 2005CHROMAT_FILE: MSMg01no270_n08.g1 PHD_FILE: MSMg01no270_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGAAAGTGCCTTTGAATAATCTACAGTCTAAACTCTTCCAGGTTATAGA
GAATTAAAATCCCTGCTGATCGAAATCCAGGTAACAGTCTAGTCCATATG
CTATCAAAAGTGTGAGCAAAAATAGACTTTAGTTCAGAGTGTAGAGAATG
TCTATCTGGATCTTTAGTGCTCATTCTGACCTCCCCTCTAACTCACTGTG
TTGCTAAAGGCAAGTGAGTTAATCTTTTTGTGACTTCATTTTTCATTTAT
GTCTTTGTCAAATGGAAATAATAACACCTACCTCGTGGAGAACATTCAAA
GGTTTAATTATATTAGTGCCTTGAACTTCTTAAATGAAAGTTGCTATAGA
AATGCAAAGTACAATTACTAAAGTAATTTCTCCTCATCCTGTGTGCAATA
TGATGATTGAAACACATTTATGTTAATTGCAAATGTGACAAACTGTCTAA
GAAACCCATCCTAATGTCCTGTGATGGACAGGGCAACAGATCAAAGTTCT
TTACGGTTATTTGAGTCACAATATACTTATTTGGTGACAGCAAGTAATCT
AACACTTAGATAAAGATTTAGTTGCTTTAAATCACTCAATATATAAAATT
TCTAATACTTAGAGACAAAGGCAATAAAATTTAGCTTAGAATCTGTATCA
GAAAATATGAATGGTCTTACATCATTATCACATAN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGTGGTTGGTTGTGACTGTGAGTAC
ATTTTTCCAGCATGAAAAAGTGGATGTGAACATAAGGGTCCATGCCTAGC
AAAGTACCTGTTGGCACTTGGTTCCTGCTCAGAGACAGAAATTCAGTTTT
CATCAGTGTTGTGACATCTGATATATAGGCCACACTCTAGGGAAGACATA
ATGCGAAGGAGTAGTTATGTAAAACAAACTGAACTTGAAGTCCAGAGAGA
AAGAGACAGACAGAGACAGACAGAGACAGAGAAACAGAGAGAGATGGAGA
CAGAGACAGATACAGATGCAGAGACAGAGAAACAGCAATATTTAAGCATG
GATTTGTGTTAGTAGGGAGTTGGAGAAGATTTGGGAAGAGCTGAGAAAGG
ACTAGGGATTTATTTAAAATTCAAAGTATGTTAACCTTCTTGAGTTCTGT
GGATTGTATCCTGGGTATTCTGTACTTCTTTGGCTAATACCCACTTTTTA
GTGAGTATATACCATGCATGTCCTTTTGGGTCTGAGTTACTTCCCTCAGG
GTGATATTTCTAGTTCCATCCATTTGTCTGCAAAACTCATGATGTCCTCG
TTCTTAATAGCTGAATAGTATTCCATTGTGTAAATGAACCACATTTTCTG
TATCCATTCTTCTCTTATGGGACATCTGGGGAGTTTCCAGCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_n08.b1 MSMg01no270_n08.b1 CHROMAT_FILE:
MSMg01no270_n08.b1 PHD_FILE: MSMg01no270_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:35 2005
         (323 letters)



>mm_chr3_114843259_114843981
          Length = 723

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagaaagtgcctttgaataatctacagtctaaactcttccaggttatagagaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaattccagaaagtgcctttgaataatctacagtctaaactcttccaggttatagagaat 323

                                                                       
Query: 65  taaaatccctgctgatcgaaatccaggtaacagtctagtccatatgctatcaaaagtgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 taaaatccctgctgatcgaaatccaggtaacagtctagtccatatgctatcaaaagtgtg 263

                                                                       
Query: 125 agcaaaaatagactttagttcagagtgtagagaatgtctatctggatctttagtgctcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agcaaaaatagactttagttcagagtgtagagaatgtctatctggatctttagtgctcat 203

                                                                       
Query: 185 tctgacctcccctctaactcactgtgttgctaaaggcaagtgagttaatctttttgtgac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tctgacctcccctctaactcactgtgttgctaaaggcaagtgagttaatctttttgtgac 143

                                                                       
Query: 245 ttcatttttcatttatgtctttgtcaaatggaaataataacacctacctcgtggagaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ttcatttttcatttatgtctttgtcaaatggaaataataacacctacctcgtggagaaca 83

                           
Query: 305 ttcaaaggtttaatta 320
           ||||||||||||||||
Sbjct: 82  ttcaaaggtttaatta 67


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)