BAC Information

Click to search

BAC

Clone NameMSMg01-271A18
Chromosome3 (Build37)
Map Location 66,216,332 - 66,216,639
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
Downstream geneLOC625115, Shox2, Rsrc1, Mlf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271A18.T7 (MSMg01no271_a18.b1)MSMg01-271A18.TJ (MSMg01no271_a18.g1)
ACCAG410712AG410713
length756751
length of high quality
(start - end)
313 (41 - 353)292 (72 - 363)
definitionCHROMAT_FILE: MSMg01no271_a18.b1 PHD_FILE: MSMg01no271_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:50 2005CHROMAT_FILE: MSMg01no271_a18.g1 PHD_FILE: MSMg01no271_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGTATCAAGACTTTTTGGGCAGAACCCTGAATGCAAGGAAAAGATTGAT
TTTAACCTATTTTAAAACATTTGATCTAATTTGATATTTCTCATTTTCAA
CGGCTTCCAGCAAATAGATGAAAATAAATATCTTGTCACATGTTGTGCTG
TGGACTATGCCTTTGGTTTTCAAAGACTGTGGAAAACGGGAGGAGAATCC
TCTATTAGTGCCGTGTGATGCCTCAGGATTTTCCAGCTGTCATTGTTCAA
AGGTCTATTTTTTTTTAGAGCCTTGTGGGATGACCAACTGGATTATTTGT
TCTATATTTTCTGTAACCCACCTCGCCTCTCGGAGTCCTTTGGCTGTAAT
GATAAAAAGAGGTGGGACACAGTGGGGAAGCATCGGGCCTTCTTCAGTAT
TTGTGGGGTGTGTGTGAGACTCTGTGCCTGCTTCCTAGACAGACATCCGA
TCCTGATATCTGAAGAGAAGGAAGAAGAAGAAATTATCAGGATTATGCCG
CTGCTGCCCCTTTCTCTCCTGAAGTCTAATTATTGTAGTGGCCTGCTGCC
TTGATTAAGGCTTTCCTCCCTAAATAATTAATTTGCCTTTATACAAGTGT
GTTTGCCTCTTACAAATCTTAACACATAGCACTGAGGACCCAGGCTCAGC
AAACCTACTTTCCAACACATAAATAATTGCCCTTGAAGTAATTAACCATT
AACCCT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCTAAACTCATCTCCACCCCAGACATGCA
GGGACTTCTGCAGCCTTGGCCCCCCCAGCAGGAGAACGTGGAACCATCTG
TGCTGTACTGGTTTTTACGAGAATAAAGAATGCAAGAGATCTGGAGGTCA
CAGAGGCTTGCTTACATTCGTATTTTCAAAGGAAAGTCTGAGAGGCCAGA
TAAAGTGTAGCAGGGTCATGGTCTCTGCAGAGAGCCCTCAAATGGGTTAG
GTTTGAAGCTGTGGTGATGAATGCTAAGTTGTAGTGAGGCCCCCAGGATG
TTGGAGATGACAGTTTCTTGGGCAATCTTCTGAGGAAAAGTGTAGGTGTT
GTGCCAACTTAGCCCAACAGAGAGGCCACACAGTAGGGCAATAGGTTGCC
CTAACACGGTGGTATTTAAGTAATGATATGAGTACTTTAGATGCCTGACA
AGGAGCTATAGGGTTTAATGTTTGCCTTGCTGGGCTTTAACCCTGCTTGG
CTCCAGTCTTCCCTGATGCCCTCTCACTCCTCTCTTTTGAAGTGGGGCTG
TTTACTGGTGTCTCTGTAATTTGGAAGTATGCGACTTGGTTTTTATTTTT
CAGGAGCTCGCAGGTAAGAGTTTGTCTTGAGTCCCAGAAGAGACTTTTGA
CTTTGAACCTTTGAATAATGTTGAAACAGTTAACACTCCGGGGACTCCTG
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_a18.b1 MSMg01no271_a18.b1 CHROMAT_FILE:
MSMg01no271_a18.b1 PHD_FILE: MSMg01no271_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:50 2005
         (313 letters)



>mm_chr3_66216128_66216839
          Length = 712

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%), Gaps = 1/309 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtatcaagactttttgggcagaaccctgaatgcaaggaaaagattgatttta 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattccagtatcaagactttttgggcagaaccctgaatgcaaggaaaagatcgatttta 264

                                                                       
Query: 65  acctattttaaaacatttgatctaatttgatatttctcattttcaacggcttccagcaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acctattttaaaacatttgatctaatttgatatttctcattttcaacggcttccagcaaa 324

                                                                       
Query: 125 tagatgaaaataaatatcttgtcacatgttgtgctgtggactatgcctttggttttcaaa 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagatgaaaataaatgtcttgtcacatgttgtgctgtggactatgcctttggttttcaaa 384

                                                                       
Query: 185 gactgtggaaaacgggaggagaatcctctattagtgccgtgtgatgcctcaggattttcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gactgtggaaaacgggaggagaatcctctattagtgccgtgtgatgcctcaggattttcc 444

                                                                       
Query: 245 agctgtcattgttcaaaggtctatttttttttagagccttgtgggatgaccaactggatt 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 agctgtcattgttcaaaggtctatttttttt-agagccttgtgggatgaccaactggatt 503

                    
Query: 305 atttgttct 313
           |||||||||
Sbjct: 504 atttgttct 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 712
Length adjustment: 9
Effective length of query: 304
Effective length of database: 703
Effective search space:   213712
Effective search space used:   213712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)