BAC Information

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BAC

Clone NameMSMg01-271B17
Chromosome3 (Build37)
Map Location 56,954,725 - 56,954,968
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040139, LOC666585
Downstream geneTm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271B17.T7 (MSMg01no271_b17.b1)MSMg01-271B17.TJ (MSMg01no271_b17.g1)
ACCAG410754AG410755
length805745
length of high quality
(start - end)
83 (42 - 124)244 (74 - 317)
definitionCHROMAT_FILE: MSMg01no271_b17.b1 PHD_FILE: MSMg01no271_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:55 2005CHROMAT_FILE: MSMg01no271_b17.g1 PHD_FILE: MSMg01no271_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGTGTTAAGGAGATTAGATTCTTCCAGAGACACAGTAGATTCCATGTGA
TTTCCGGGGGGGGGGGGGTGGNGNNNNNNNNNNNTNNANNNNNNCNNNNN
NNNNNNNNNNNNNNNGANAGAAAAACNAAAACCCCCCATAAAACACTCTC
TTCACCCCCCACCAATTTTATACGCGACCCGACAGATTTGGCAGGAATGT
AATCTGTGAACCCACAAGACCAACCACCGGGCAACGACGCGGCGGATTTT
TTTTTTTTCAGCCAGCCAAAAAAAAGCAAAGAGAGGATTTAGGGTGGGAC
TCCAAAAAACAAAAACCCTGATTTTTTTTAGAGTGGTGGTGGTCCCCCCC
CCTGTAAAANNNTATNTTAAAAAAGGGGGGGGGGGGGGGGGGTTCNTTCA
CCTGCCTCGACACAAATCTTTTGTACACTGTGAGATTGGTGATATCCTTA
TTTGGACAGCATAGACGACGAATCGAGGGTATGTTTTGTGAGGGGGCGAA
TCCCGTAGGCCCCGTGTGCGCATTGTCGGTACGGACCAATGTGAATTGTC
CTCAAAGCCCGTGTTTATCTGTATAGTCCATTTATTTGGGGAGGGGTATT
ACTGTGCGTTGATCACCAGGAAGAAATGGGCTAGCCCGTTTGTGGGGGAC
GTATAANGTTAACTTCGCCTATCACAGTACGCACCATATAAGAGTGAACG
CTTTGGTACGCAAAGCGTTGAGTTCGAGCAATTGACGACTCTATGTATTT
ATAAT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXGCTGCTGAACATGACCTTATAAGGGAA
GTTTAACCTGGCTACCACCCTACTTGGCTTCCTTTAGTGTGCCAGGCCCA
TACCATTCCATACCATATGGGGTCTCTGTGATCTCTTCCTAGTTTAAACT
GAAAAATGTGCTATCTATTCATGCCAGTAACAGGGCTAAGAGCACACAAA
CAAGTTGCTTGAGTTTTGTTAGAAACACATCTGCTTATGGAGGGAGGCTG
GTTGAGCTAGACACACAGATGTATATGAAAGTTCTGACATATATAGACAT
ATATATTTGGGTTCCCCGANAGCGNNTNCCTGTGTAGTCCTGGCTGTCCT
GGAACTCACCCCCCACACAAAGCAGCCAAAAAACTCGGAAGTCCGCCTGC
CTCTGCCTCACAAGTGCTGGGATTAAAGTTGTGCGCCATCATCGCCTGGA
GAAGTTCCGACTTTTAAAACTCAGAAAAACTAGAATCTCTTCAGACATCC
TATCCCCTACCCATGAGGTAGTAGATGTGGGGATGCGGAGGACAACCTTG
TGAATGAATAAGTGCAACGTATATTTATTTTCCGCAGGCTTCTGCAAATT
CTTATAGATTTCTCGATTTGCCGCCCTTGTAATTATATCCCTCATTGCTC
CCCCGCCCCCGCTTATTTTCCTCCCCCTCTCAAATTTTTTATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_b17.g1 MSMg01no271_b17.g1 CHROMAT_FILE:
MSMg01no271_b17.g1 PHD_FILE: MSMg01no271_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:55 2005
         (244 letters)



>mm_chr3_56954525_56955168
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctgctgaacatgaccttataagggaagtttaacctggctaccaccctacttggcttcct 60
           ||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||
Sbjct: 444 gctgctgaacatgaccttataagggaagtttaacctgactaccaggctacttggcttcct 385

                                                                       
Query: 61  ttagtgtgccaggcccataccattccataccatatggggtctctgtgatctcttcctagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttagtgtgccaggcccataccattccataccatatggggtctctgtgatctcttcctagt 325

                                                                       
Query: 121 ttaaactgaaaaatgtgctatctattcatgccagtaacagggctaagagcacacaaacaa 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 324 ttaaactgaaaaatgtgctatctattcatgccagtaacagggctcagagcacacaaacaa 265

                                                                       
Query: 181 gttgcttgagttttgttagaaacacatctgcttatggagggaggctggttgagctagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttgcttgagttttgttagaaacacatctgcttatggagggaggctggttgagctagaca 205

               
Query: 241 caca 244
           ||||
Sbjct: 204 caca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)