NGGGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTTAGCTCTGAGCCCCACTTTTTAATGGGGTTATT
TAATTTTCTGGAGCCCACCTTCTTGATTTCTTTATATATATTGGATATTA
GTCCCCTATCTGATTTAGGACAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGTCTTTTTGTCTTGTTTACAGTGTCTTTTGCCTTGCAGAAGCTTTGCAA
TTTTATGAGGTCCCATTTGTTGATTCTCGATCTTACAGCACAAGCCATTG
CTGTTTTTCAGGAATTTTTCACCTGTACCCATATATTTGAGGGTTTTCCC
TACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCT
TAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATT
CACATTCTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAA
AATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGGTCA
AATGACCATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCAT
TGGTCTACTTGTCTGTCGCTATACCTGTACCATGCAGTTTTTATCACAAT
TAATCTATAGTACAGCTTTAGGTCAGGCATGGTGATTCTACCAGAGGTTC
TTTTATCCTTGAGAGG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTCCACAGAAAAGCACATGACTGGCAAGT
GATCGTACCAATCATTGATGAGGTTCTTATAGAATTCATCTTATTCCTCT
TGAGTGACGTTATCAGGTTTTCTCATCAAAATAGGCTGAGTCTTATTCAA
CTCTTCCAGTTCAGTGTATTTCTCCTTAAAGATCTTTGTTTTCTTTTTCC
TATCCTTGCCACTGTCACCCTTCTTATCTGATCCCACATCTTCAATCTTA
GGTTTTTCCTCATTATCATTATTTTTCTCCTCTTTCTTACCTTTCTTTCC
CTGTGGTTGAATTAGGGAAAAGCTGAAAGAAGCTGAGGAGGAGAGTGACC
CCATAGGAAGCCCAGTAGCCTCAAGTAACTGGATCTCTCAAACACGGAGT
CACCAACTAGGCAGCATACACTAGCTGATATGAGGCCCCCAACACATATA
CAGCAGAGAACTGCCTGGTCTGGCTTCAGTGAGAGAAGATGCACCTAACC
CTCAAGAGACTTGAGGCCTCAGGGAGTGGGGAGGTCTGGTGGGGTGGGGC
TTGAGGGGATGGATACATCCTCTTGGAGATGGGTGTGGCGAGGATTNNCC
CATTGTTTGACTTAATTTCCCTCTTCCGGTATTTTGTTAATTCCCTTCTC
TCCCTTCTTCACGCATTTCCCTAACTTCTATACCCCTTTTGCN

Query= MSMg01no271_e03.g1 MSMg01no271_e03.g1 CHROMAT_FILE:
MSMg01no271_e03.g1 PHD_FILE: MSMg01no271_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:06 2005
         (561 letters)



>mm_chr3_61790251_61791211
          Length = 961

 Score =  870 bits (450), Expect = 0.0
 Identities = 471/478 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttccacagaaaagcacatgactggcaagtgatcgtaccaatcattgatgaggttcttat 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 478 cttccacagaaaagcacatgactggcgagtgatcgtaccaatcattgatgaggttcttat 419

                                                                       
Query: 61  agaattcatcttattcctcttgagtgacgttatcaggttttctcatcaaaataggctgag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 418 agaattcatcttattcctcttgagtgacgttatcaggttttctcatcaaaatagactgag 359

                                                                       
Query: 121 tcttattcaactcttccagttcagtgtatttctccttaaagatctttgttttctttttcc 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 358 tcttattcaactcttccagttcaatgtatttctccttaaagatctttgttttctttttcc 299

                                                                       
Query: 181 tatccttgccactgtcacccttcttatctgatcccacatcttcaatcttaggtttttcct 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tatccttgccactgtcaccctccttatctgatcccacatcttcaatcttaggtttttcct 239

                                                                       
Query: 241 cattatcattatttttctcctctttcttacctttctttccctgtggttgaattagggaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 cattatcattatttttctcctctttcttacctttctttccctgtggttgaattagggaaa 179

                                                                       
Query: 301 agctgaaagaagctgaggaggagagtgaccccataggaagcccagtagcctcaagtaact 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 178 agctgaaagaagctgaggaggagagtgaccccataggaagaccagtagcctcaagtaact 119

                                                                       
Query: 361 ggatctctcaaacacggagtcaccaactaggcagcatacactagctgatatgaggccccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ggatctctcaaacacggagtcaccaactaggcagcatacactagctgatatgaggccccc 59

                                                                     
Query: 421 aacacatatacagcagagaactgcctggtctggcttcagtgagagaagatgcacctaa 478
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 58  aacacatatacagcagaggactgccttgtctggcttcagtgagagaagatgcacctaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)