BAC Information

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BAC

Clone NameMSMg01-271F05
Chromosome3 (Build37)
Map Location 92,769,063 - 92,769,370
singlet/doubletsinglet
Overlap genenone
Upstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994
Downstream gene2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271F05.T7 (MSMg01no271_f05.b1)MSMg01-271F05.TJ (MSMg01no271_f05.g1)
ACCAG410911AG410912
length746745
length of high quality
(start - end)
314 (45 - 358)291 (71 - 361)
definitionCHROMAT_FILE: MSMg01no271_f05.b1 PHD_FILE: MSMg01no271_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:10 2005CHROMAT_FILE: MSMg01no271_f05.g1 PHD_FILE: MSMg01no271_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGGTTGCATATAAGGCATACATCTGCTTTCTAGTCTAAGATCCTG
GTGAGCGAGAACCTTCCATCATCTTCCACCAGTTTAGTGTAGCCTGAGTT
CCTGTAGTAGAATGAATATTTGCTTTCTCTCAAACTCATATGGAAACTCT
AACCCCTAATTTTATAGTATTAGAAGAATAAACTCCAGGAGAACATGTGA
AGTATAAGAATGTTGTGAGAAATACACCTTAGCTGTTTTTATGCCATCTG
TTATAGCAGCCTGAAGGAACCAAGAAAGCCCTCAACTTTCCGAAGGTGAC
TGTCTTGATTTATTTCCCCTCCCCCTCTTCTTGAAGGCTTTCTAGATGAG
AGTTCCTCTCATGGAAGCCATTCATCTCTCTGTATTTAAGTTAAACACAT
TTGATGGAGCATGCCTCATGAGGCAGGCAGCGTGGACTGCACTGTGAATG
CACCTTGGAACCAAGGGGAGTTTATGTAGGACAGACAGCAAGAGAATAAG
CATTTTGTTGTCTAGAGCTGGGACTCACAGTTCTCTTAATTGTGCTGTAA
AAATCCTGGAGCTTCAGATGATTGGCAGAAGTCAGACACTGATTTCACCT
ACTTAATAATCCTTTAGAAGCAAGAACAGGCACTGTTTTTGACCAGGTGG
ATAGAATCTTAAGTTACTGGGAATCAAACTTGNAACTTCACCTCTG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTATATATTGCATATTAGCCTTCTATC
AGATGTAGGGTTGGTAAAGATCTTTTCCCACTCTGTTAGTTGTTATTTTG
TACTATTGACACTGTCCTTTGCCTTATAGAAGCTTTGCAATTTTATGAGG
TCCCATTTGTCAATTCTTGATCTTAGAACATAAGCCATTGGTGCTCTGTT
CAGGAAATTTTCCCCTGTGCCCATGTCCTCAAGGCTCTTCCCCTTTTTCT
TTTCTTTTAGTTTCAGTGTATCTGGTTTTATGTGAGGGTCCTTGATCCAC
TTAGACTTGTTTTTTGTACCCCCCCCCCCCAATGGATCAATTTGCATTTT
TCTATATGCTTACCCACAGTTGAGCCAACACCATTTGTTGAAAATGCTGT
CTTTTTTTTTCCACTGGAGGGTTTTAGCTCCTTTGTCAAAGATCAAGAAC
CATATGCGCGTGGGTCCATTTCTTCAATTCTGTTCCATTGATCTACCTGC
CTGTTTCTGTACCAGTACCATGCAGTTTTATCACTAGTGCTCTGTTATAC
AGCTTGAGGCCAGGGATGGCGATTCCCCCATAAATGCTCCTATTGCCGAA
AGTACTTTTTGATGCCTTGTGTCTCTGTAATTCCACATGATTTTTGAAAT
TTGCTCTTTCCTAAATTTGCACACCGCTGCTGTAATTTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_f05.b1 MSMg01no271_f05.b1 CHROMAT_FILE:
MSMg01no271_f05.b1 PHD_FILE: MSMg01no271_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:10 2005
         (314 letters)



>mm_chr3_92768859_92769572
          Length = 714

 Score =  497 bits (257), Expect = e-145
 Identities = 296/309 (95%), Gaps = 2/309 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgggttgcatataaggcata-catctgctttctagtctaagatcctggtgagcg 63
           |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 512 gaattctgggttgcatataaggca-agcatctgctttctagtctaagatcctggtgagcg 454

                                                                       
Query: 64  agaaccttccatcatcttccaccagtttagtgtagcctgagttcctgtagtagaatgaat 123
           || |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 agcaccttctatcatctttcaccagtttagtgtagcctgagttcctgtagtagaatgaat 394

                                                                       
Query: 124 atttgctttctctcaaactcatatggaaactctaacccctaattttatagtattagaaga 183
           ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 393 atttgctttctcttaaactcatgtggaaactctaacccctaattttatagtattagaaga 334

                                                                       
Query: 184 ataaactccaggagaacatgtgaagtataagaatgttgtgagaaatacaccttagctgtt 243
            ||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||
Sbjct: 333 gtaaactccaggagaacatgtgaattttaagaatgttgtgataaatacatcttagctgtt 274

                                                                       
Query: 244 tttatgccatctgttatagcagcctgaaggaaccaagaaagccctcaactttccgaaggt 303
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttgatgccatctgttatagcagcctgaaggaaccaagaaagccctcaactttccgaaggt 214

                    
Query: 304 gactgtctt 312
           |||||||||
Sbjct: 213 gactgtctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)