Query= MSMg01no271_g23.b1 MSMg01no271_g23.b1 CHROMAT_FILE:
MSMg01no271_g23.b1 PHD_FILE: MSMg01no271_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:18 2005
(323 letters)
>mm_chr3_8503701_8504422
Length = 722
Score = 524 bits (271), Expect = e-153
Identities = 305/317 (96%), Gaps = 5/317 (1%)
Strand = Plus / Minus
Query: 7 gaattcaactgaggt-tacgcattagatgtgctgagattaacacttttagaagaacatgg 65
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattcaactgaggtatatgcattagatgtgctgagattaacacttttagaagaacatgg 461
Query: 66 gccgtataagaaatccatcgctgacaggttggctgctaagcacttgtctgtttatttttg 125
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gccgtataagaaatccatcgccgacaggttggctgctaagcacttgtctgtttatttttg 401
Query: 126 tcaacgtcttgcttctgtaggtatttaactgagtttaggattagttcttctgtgctgacg 185
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tcaacttcttgcttctgtaggtatttaactgagtttaggattagttcttctgtgctgacg 341
Query: 186 tatattcatcaagtaagatcctttttaaaaactaattcattttgtatgtattcactgaac 245
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||
Sbjct: 340 tatattcatcaagtaagatcctttttaaaaactaattcattttttatgtgttcacttaac 281
Query: 246 atcttgatcaatgtacctccttccagtaacaaccct-cccccccaccccccccaccccct 304
||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||
Sbjct: 280 atcttgatcaatgtacccccttccagtaacaaccctgcccccccacccccc--accccc- 224
Query: 305 gtcccttcccatatttg 321
|||||||||||||||||
Sbjct: 223 gtcccttcccatatttg 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 722
Length adjustment: 9
Effective length of query: 314
Effective length of database: 713
Effective search space: 223882
Effective search space used: 223882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_g23.g1 MSMg01no271_g23.g1 CHROMAT_FILE:
MSMg01no271_g23.g1 PHD_FILE: MSMg01no271_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:18 2005
(649 letters)
>mm_chr3_8347666_8348711
Length = 1046
Score = 1110 bits (574), Expect = 0.0
Identities = 630/650 (96%), Gaps = 4/650 (0%)
Strand = Plus / Plus
Query: 1 attaggtaacaattgataatacattaggacc-agaagataataatacaaaataaactaat 59
||||||||||| ||||||||| ||||||||| | || |||||||||||||||||||||||
Sbjct: 200 attaggtaacagttgataatatattaggaccaaaaaaataataatacaaaataaactaat 259
Query: 60 tataactgtatgtaccaaaaagaataattctgaaagagaaaaaataaatttaaagtaatt 119
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 260 aataactgtatgtaccaaaaagaataattctgaaggagaaaaaataaatttaaagtaatt 319
Query: 120 ctagaaagattacagtttcaatatataaatgtttcaaaattggacacagtgaataatata 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtagaaagattacagtttcaatatataaatgtttcaaaattggacacagtgaataatata 379
Query: 180 ttaagcacaaaacatttgcattgaaatgaatgataaaataagcagaaagaacttttttgc 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 380 ttaagcacaaaacatttgcattgaaataaatgataaaataagcagaaagaacttttttgc 439
Query: 240 atgaatctaggacagcaagtcattctctgtgggagaaaaagcccagagtgtctcctatat 299
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 440 atgaatctagggcagcaagtcattctctgtgggaggaaaagcccagagtgtctcctagat 499
Query: 300 atcgctaaattcagccaagttgacactaaagattgatcatcacggcgcccaaatgctcac 359
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 500 atcgctaaattcagtcaagttgacactaaagattgatcatcacggtgcccaaatgctcac 559
Query: 360 tgcggttgttattactgatagtattaaattagttgtactataaaaatatacttttccatc 419
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgcggtt---attactgatagtattaaattagttgtactataaaaatatacttttccatc 616
Query: 420 tgagatgctgcatattaatgcattttaaaaccaatgtgcagcaagagtctaacattaaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgagatgctgcatattaatgcattttaaaaccaatgtgcagcaagagtctaacattaaaa 676
Query: 480 caatccttaaaaggcatgcatgcttctggggactttgtagtcagtatctaacccccatgt 539
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 caatccttaaaaggtacgcatgcttctggggactttgtagtcagtatctaacccccatgt 736
Query: 540 caagcactgctgctcactgcacacaaatccacctcaagtcaccctgtgatgctttagtgt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 caagcactgctgctcactgcacacaaatccacctcaagtcaccctgtgatgctttagtgt 796
Query: 600 actgccagacagtctgacttacagcaagagtatcactcacaacctgtcag 649
||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 797 actgccagacagtctgacttacagcaagagtatcactcacagcctgtcag 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1046
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1036
Effective search space: 662004
Effective search space used: 662004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
