BAC Information

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BAC

Clone NameMSMg01-271N20
Chromosome3 (Build37)
Map Location 127,961,463 - 128,125,738
singlet/doubletdoublet
Overlap geneEG668828
Upstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382
Downstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271N20.T7 (MSMg01no271_n20.b1)MSMg01-271N20.TJ (MSMg01no271_n20.g1)
ACCAG411300AG411301
length760749
length of high quality
(start - end)
318 (38 - 355)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no271_n20.b1 PHD_FILE: MSMg01no271_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:50 2005CHROMAT_FILE: MSMg01no271_n20.g1 PHD_FILE: MSMg01no271_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,961,463 - 127,961,788)(128,125,449 - 128,125,738)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAT
TTCATCTGTGAAGATAATGAGGTAATGCAAGTTGAAGGTAAATGGATGGA
ACTAGAAACTATTACACAGAATTAAGTATGTAGGCCCAAAAAGACAAATG
GTGCATGCTCTCTCTTATTTGTAGAGTCCAGATTTTTTTTTTTTAAGTAC
AGGTAGATTTTTTTTTTTCCAGAATTGTAAAGATAGGAGTGAGAGACTAA
GAGTTGGACAGCTAACCTGGTGGGCAGACAAATAGAGAAAAGGGCCACAG
CTAGGCAATGAAGGAGTCGAATTTCCAAGATGGCTGGCTTATTCCTTGTC
CTCCTGTCTTGATACAACCCCCGGCACCTCAAAACAAAGGCTGTGTAGAC
TTGTTTTTCTCTCCTGCTAGCCATTAAGTTCCAGCAGATAAACTTGCAGA
TGGACAAGTTCGAAGACTGCTTAAGATACATGACAGCTGTGGGCTAATTG
GCCATCTTTTCTCTTCAAACTGACCAATTCTAGGCTAGGGAAGGAAAAGT
CATTAGAGGCTTAAAACAAAACAAAATAAAACACAACACAACAATAACAA
CAAAAAGAAAACAAACAAACAGACACAACCAACCCTCAAGAAGAGATTGG
ACTTTTTGGCTCTTCTTGTTTGCCCTCTGCATTTTCTCCTTTATTCCCCC
CCTCCCCACCACCAAACAGAGGGCCTTTTTTCCCTGTATGTCTGCTGAAT
GCCCGTATTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTCAAAATGAAACTTATTTCAAAAGGAT
TATGGCCAAGAAAATGATTGCTCTTGGGTAAAAATATATACACAAAAATT
AACAAGAACATATTGTTTACTTTCTTCTAGTTCAAGATCCCAGACAGAAA
TAACAGAGATGGGAGTGCCTCAGAAAGCACAGACTCGACATAAAGATACT
GAAGGCATTGGAAGATAATGAAGGGATTAATGCAGATTACTGCAGCAACA
CAATTTTTTCAAAAGTGCTACAGAGAAAATTTTAATGTATTGATAGACCA
TGTTTGAATAATTAATATATTTTTCCGCATTATCATTTCTGTATCAAGCT
CCAAAGTAGGGATGAAATCTACCCTCACGATTTAAATTACAAATCACAAA
TTTATAATGAGAAGAAGAAATACCTACTGGAACACTCCTGAAGAGTCACA
GAATACAAAAAAGCTTTCAGGTTTCCTAAAATTAGGCTGTCAGTAATATC
ACAAAACTGGGCATTGCTCTGTCAGAACCCTGTCCTAAGAATGGAAGGAA
TGTTCCAGATAGGCAAGTTTTTCCACAGTTTCTTCCTAAGATCCTCCAAG
TATCTCTTGCCACGTGGTTGTGTTTTTTAAAATACTTCAAATTCATATTT
CTTCCAAAGTTATTAAACAATTTTACATTTCTATGATTTATATGTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_n20.b1 MSMg01no271_n20.b1 CHROMAT_FILE:
MSMg01no271_n20.b1 PHD_FILE: MSMg01no271_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:50 2005
         (318 letters)



>mm_chr3_127961272_127961988
          Length = 717

 Score =  495 bits (256), Expect = e-144
 Identities = 303/328 (92%), Gaps = 17/328 (5%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattccatttcatctgtgaagataatgaggtaatgcaagttgaaggtaaatggatggaac 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 aattccatttcatctgtgaagataatgaggtaatgcaagttgaaggtaaatggatggaac 251

                                                                       
Query: 66  tagaaactattacacagaattaagtatgtaggcccaaaaagacaaatggtgcatgctctc 125
           ||||||  |||||||||  |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 252 tagaaaagattacacagggttaagtatgtagacccaaaaagacaaatggtgcatgctctc 311

                                                                       
Query: 126 tcttatttgtagagtccaga-tttttttttt--------------ttaagtacaggtaga 170
           |||||||||||||||||||| ||||||||||              |||||||||||||||
Sbjct: 312 tcttatttgtagagtccagagttttttttttgttttttgttttttttaagtacaggtaga 371

                                                                       
Query: 171 tttttttttttccagaattgtaaagataggagtgagagactaagagttggacagctaacc 230
           |||||||||  ||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 372 ttttttttt--ccagaattgtaaagataggagtgggagactaagagttagacagctaacc 429

                                                                       
Query: 231 tggtgggcagacaaatagagaaaagggccacagctaggcaatgaaggagtcgaatttcca 290
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tggtgggcagacaaatagagagaagggccacagctaggcaatgaaggagtcgaatttcca 489

                                       
Query: 291 agatggctggcttattccttgtcctcct 318
           ||||||||||||||||||||||||||||
Sbjct: 490 agatggctggcttattccttgtcctcct 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space:   218772
Effective search space used:   218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no271_n20.g1 MSMg01no271_n20.g1 CHROMAT_FILE:
MSMg01no271_n20.g1 PHD_FILE: MSMg01no271_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:50 2005
         (291 letters)



>mm_chr3_128125249_128125939
          Length = 691

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcaaaatgaaacttatttcaaaaggattatggccaagaaaatgattgctcttgggtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 attcaaaatgaaacttatttcaaaaggattatggccaagaaaatgattgctcttgggtaa 431

                                                                       
Query: 61  aaatatatacacaaaaattaacaagaacatattgtttactttcttctagttcaagatccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aaatatatacacaaaaattaacaagaacatattgtttactttcttctagttcaagatccc 371

                                                                       
Query: 121 agacagaaataacagagatgggagtgcctcagaaagcacagactcgacataaagatactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agacagaaataacagagatgggagtgcctcagaaagcacagactcgacataaagatactg 311

                                                                       
Query: 181 aaggcattggaagataatgaagggattaatgcagattactgcagcaacacaattttttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaggcattggaagataatgaagggattaatgcagattactgcagcaacacaattttttca 251

                                                             
Query: 241 aaagtgctacagagaaaattttaatgtattgatagaccatgtttgaataa 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaagtgctacagagaaaattttaatgtattgatagaccatgtttgaataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)