BAC Information

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BAC

Clone NameMSMg01-271O04
Chromosome3 (Build37)
Map Location 60,064,894 - 60,181,289
singlet/doubletdoublet
Overlap geneLOC669823
Upstream geneP2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1
Downstream geneLOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1, Rap2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271O04.T7 (MSMg01no271_o04.b1)MSMg01-271O04.TJ (MSMg01no271_o04.g1)
ACCAG411315AG411316
length738726
length of high quality
(start - end)
354 (383 - 736)338 (75 - 412)
definitionCHROMAT_FILE: MSMg01no271_o04.b1 PHD_FILE: MSMg01no271_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:52 2005CHROMAT_FILE: MSMg01no271_o04.g1 PHD_FILE: MSMg01no271_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,180,936 - 60,181,289)(60,064,894 - 60,065,231)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGATCCGCGGAA
TTCTCCTGAATTCCGAAACAGTAAGTTATTCTGCGACTTCTGTCAAATAT
TTCATCACACTGAGAAGAACCCATTAATATGTTATTATCTCATTTGGATA
AATACCTTAACGTGGAAATTCTGTGTCTTTTGGTAAACTTGTAATCCAAA
GCAGGCAAAACATGTATGCATGCCTACCCATCAACAATGACCAAGGACTC
TTCCTATTGCTTTCAAACTCCTGGTATTTTCAGTGATAGTAGATTTTATC
ATTCTAATAAGTGTATAGTGATATTTCATTCTTATTTAAAATTTAAATTT
CCATGCTATATATTTATGCTCGCCACCCTCCTATATACTTACTTTTTGTG
AGTGTTATTTCTAGGGTCCTGTTTGATCTGAATTTTTCATATCTACAGTT
ATTATGTAATTGGTATTTAATCTTTTCAGTTACTTTAAAATTGAACTATT
TATAATATATTTTAAAATAATAATAACATCACACCATTCTTCCTGTTTCC
ATTTCTACCTCTAGCCCCTCCCACGTCTCCTCTCCAAACTTCCTAAGCCT
CTCTCCATTCTCATATTGATGTCCTCTTTTTTCTTGATTTAGAATTTTTG
TGTCTCTAGCCAGATATATGTTTTCCAAATATTCTCTCTTAGGTTATAGG
TTGTTTGAACTTTCANAAAATATTACATGTAGAAACTT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGTTTTATGTTTGATGCCAAATTTT
TTACATTTTATTTCAATAATAAACAGTTTTTAAAAAGATAATTAATCTTG
CTATGTTAAATCACTCTTCACTCCTGAAATTAAGAAGTTTTTTATACTGA
ATGGTAGAATGAAGGGTTAGAGAGCTTTCCAAGAGGCTAAAAAGTAATAA
TTCTATTCGAGAAGACCTAAGCTTCGTTTCCAGCACCCCCATCAGGAAGC
TTACAAACAGTCTTCAATTTCATCTACAATGACATCTGACTCAGTCAACC
ACATGCCCACACATAGTTTTATACCCATAGATAATTAAAATTAATAAAAA
TAAATCTTAAAATTACAAAAGAGAGTGATTTTAAAACTTATACAAACCAT
CCAATAGTCATGACTGTTTACTCCTAAGTGGGACCAGTAATCCTTGTTCA
GTATTTTCCCTTTCACATTGGCTACCGTATTTACTTTGCAATCAATATTT
TCTTATCTTCTATGGCATCATAATTCAAGGTATAATGTGTTATGAAAACT
GTAAGCCATACTAAATGCTATGTCACATCTTCATGCCATGTAACTTTGAC
ACCTCTCCCATTTTTAGCATTCTCAGTGTCTCCTTTCTTCTATATTTTAC
TGCCTTACAAATAATATAGTATCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_o04.b1 MSMg01no271_o04.b1 CHROMAT_FILE:
MSMg01no271_o04.b1 PHD_FILE: MSMg01no271_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:52 2005
         (354 letters)



>mm_chr3_60180592_60181345
          Length = 754

 Score =  663 bits (343), Expect = 0.0
 Identities = 351/354 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatacttactttttgtgagtgttatttctagggtcctgtttgatctgaatttttcatat 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 698 atatacttactttttgtgagtgttatttctagggtcctgtttgttctgaatttttcatat 639

                                                                       
Query: 61  ctacagttattatgtaattggtatttaatcttttcagttactttaaaattgaactattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ctacagttattatgtaattggtatttaatcttttcagttactttaaaattgaactattta 579

                                                                       
Query: 121 taatatattttaaaataataataacatcacaccattcttcctgtttccatttctacctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 taatatattttaaaataataataacatcacaccattcttcctgtttccatttctacctct 519

                                                                       
Query: 181 agcccctcccacgtctcctctccaaacttcctaagcctctctccattctcatattgatgt 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 518 agcccctcccacgtctcctctccaaccttcctaagcctctctccattctcatattgatgt 459

                                                                       
Query: 241 cctcttttttcttgatttagaatttttgtgtctctagccagatatatgttttccaaatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cctcttttttcttgatttagaatttttgtgtctctagccagatatatgttttccaaatat 399

                                                                 
Query: 301 tctctcttaggttataggttgtttgaactttcanaaaatattacatgtagaaac 354
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 398 tctctcttaggttataggttgtttgaactttcaaaaaatattacatgtagaaac 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no271_o04.g1 MSMg01no271_o04.g1 CHROMAT_FILE:
MSMg01no271_o04.g1 PHD_FILE: MSMg01no271_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:52 2005
         (338 letters)



>mm_chr3_60064694_60065431
          Length = 738

 Score =  623 bits (322), Expect = 0.0
 Identities = 334/338 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagttttatgtttgatgccaaattttttacattttatttcaataataaacagtttttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cagttttatgtttgatgccaaattttttacattttatttcaataataaatagtttttaaa 260

                                                                       
Query: 61  aagataattaatcttgctatgttaaatcactcttcactcctgaaattaagaagtttttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagataattaatcttgctatgttaaatcactcttcactcctgaaattaagaagtttttta 320

                                                                       
Query: 121 tactgaatggtagaatgaagggttagagagctttccaagaggctaaaaagtaataattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactgaatggtagaatgaagggttagagagctttccaagaggctaaaaagtaataattct 380

                                                                       
Query: 181 attcgagaagacctaagcttcgtttccagcacccccatcaggaagcttacaaacagtctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcgagaagacctaagcttcgtttccagcacccccatcaggaagcttacaaacagtctt 440

                                                                       
Query: 241 caatttcatctacaatgacatctgactcagtcaaccacatgcccacacatagttttatac 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 441 caatttcatctacaaggacatctgactcagtcaaccacatgcccacacataggcttatac 500

                                                 
Query: 301 ccatagataattaaaattaataaaaataaatcttaaaa 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccatagataattaaaattaataaaaataaatcttaaaa 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)