BAC Information

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BAC

Clone NameMSMg01-272B18
Chromosome3 (Build37)
Map Location 46,429,313 - 46,429,602
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433580, LOC671801, EG241989
Downstream geneLOC545517, LOC383849, LOC383850, LOC100039426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272B18.T7 (MSMg01no272_b18.b1)MSMg01-272B18.TJ (MSMg01no272_b18.g1)
ACCAG411482AG411483
length759742
length of high quality
(start - end)		697 (40 - 736)290 (71 - 360)
definitionCHROMAT_FILE: MSMg01no272_b18.b1 PHD_FILE: MSMg01no272_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:10 2005CHROMAT_FILE: MSMg01no272_b18.g1 PHD_FILE: MSMg01no272_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACCTGATTAATACCGAATGGCAGAGAAGCATCTGAAAAAATGTTCAACA
TCCTTAATCATCAGGGAAATCGCAAATCAAAACAACCCTGAGATTCCACC
TCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGC
TGGCGTGGATGTGGAGAAAGAGGAACACTCCTCTATTGTTGGTGGGATTG
CAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAAT
TGGACATAGTACTACCGAAGGATCCAGCAATACCTCTCCTGGGCATATAT
CCAGAAGATGCCCCAACTGGTAAGAAGGACACAAGCTCCACTATGTTCAT
AGCAGCCTTATTTATAATAGCCAGAAGCAGGAAAGAACCCAGATGCCCCT
CAACAGAGGAATGGATACAGAAAATGTGGTAAATCTACACAATGGAGTAC
TACTCAGCTACTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGAT
GGACCTGGAGGGCATCATCCTCAGTGAGGTAACACATTCACAAAGGAACT
CACACAATATGTACTCACTGACAAGTGGATATTAGCCCAAAACCTAGGAT
ACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGATAAAT
GAAGACTGAAGGGTGGACACTATGCCCCTCCTTAGAAGTGGGAACAAAAC
ACCCTTGGA

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCTCTATCAATATTACTTTCAATTTCTAT
GTTCCATTGGTGTCTTTGTTTTAGTCAACATAGATTTAATATTCCAATTT
TTCAACAGTGTACAGAAGTTTAAATTAATAATTAAATTTTGTTTCTTTGA
AAGTTGTCACTTTCACCTTCATGTCATATTAGTTTTAGCATGATTTTCAG
ATTATGTATTTATGTTTCATTATTATTCATTTTGTAATATATTTTGTTGC
CTTTTTGAGTTTCTTCCTTTATTACCAAGGTACTCAGATTATCTTCCTTG
ACATTATATATTTTTGTTTTACCCCCCCCCCATTCTGAACTCATATAATA
TCTGATGTACATTATCTACTGTAAAAATCTCCTCATCAGCTCTAGTAAAT
TCTTATCTTTTCATTGACATCACCAAATCATAATTAGGAAGTCAAACCAT
TAATAACTTTTATAATGAAAGTCTCAAATTCTTGTTAAATGAATAAAAAA
AATAAAACCCTTCCTGACCAGCTGGAGAGAGAACAAGTTAATAGATTGAG
TCAATTTATCTTTATTAATTGATGTTTGTAATGAATGCATTCATCTCTCC
TCCCTCCTTTGTAAATGGAAAGCATACTCCTGTATGTACTATACAATTCT
TCACTACAAGAAAAACAGGTTTGGTGTGCTGCTGTTCACAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_b18.g1 MSMg01no272_b18.g1 CHROMAT_FILE:
MSMg01no272_b18.g1 PHD_FILE: MSMg01no272_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:10 2005
         (290 letters)



>mm_chr3_46429113_46429802
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctctatcaatattactttcaatttctatgttccattggtgtctttgttttagtcaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctctatcaatattactttcaatttctatgttccattggtgtctttgttttagtcaaca 260

                                                                       
Query: 61  tagatttaatattccaatttttcaacagtgtacagaagtttaaattaataattaaatttt 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagatttaatattccattttttcaacagtgtacagaagtttaaattaataattaaatttt 320

                                                                       
Query: 121 gtttctttgaaagttgtcactttcaccttcatgtcatattagttttagcatgattttcag 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttctttgaaagttgtaactttcaccttcatgtcatattagttttagcatgattttcag 380

                                                                       
Query: 181 attatgtatttatgtttcattattattcattttgtaatatattttgttgcctttttgagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attatgtatttatgtttcattattattcattttgtaatatattttgttgcctttttgagt 440

                                                             
Query: 241 ttcttcctttattaccaaggtactcagattatcttccttgacattatata 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcttcctttattaccaaggtactcagattatcttccttgacattatata 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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