Query= MSMg01no272_f05.b1 MSMg01no272_f05.b1 CHROMAT_FILE:
MSMg01no272_f05.b1 PHD_FILE: MSMg01no272_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:27 2005
(699 letters)
>mm_chr3_83160424_83161524
Length = 1101
Score = 1218 bits (630), Expect = 0.0
Identities = 677/701 (96%), Gaps = 14/701 (1%)
Strand = Plus / Minus
Query: 1 gaaactattccaagcaaggacagagtacaggagaacagtaaatggaagggagactcctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 765 gaaactattccaagcaaggacagagtacaggagaacagtaaatggaagggagacttctga 706
Query: 61 cacccacccttaactttaatagtagaaactttcatatatataaaagaaaaacttcattta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cacccacccttaactttaatagtagaaactttcatatatataaaagaaaaacttcattta 646
Query: 121 aaaatatactgctaaaatactctatgaaatttataattagctagtaacgtagttttatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aaaatatactgctaaaatactctatgaaatttataattagctagtaacgtagttttatct 586
Query: 181 acacaaacttcaaaagtggacattgagtagataaattatctcacacccaaagtcacacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 acacaaacttcaaaagtggacattgagtagataaattatctcacacccaaagtcacacta 526
Query: 241 tccctaaagaaaataaaatgaagtgatttctataaattaatctttgaaggttttttttat 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 525 tccctaaagaaaataaaatgaagtgatttctataaattaatctttgaaggtttttttttt 466
Query: 301 --atctggacagagcaccagtggggtcatcatttggagagaaggcagagtatcatgttgg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 taatctggacagagcaccagtggggtcatcatttggagagaaggcagagtatcatgttgg 406
Query: 359 tcacatgctgagctgcctaagattctcctgtccatcgcagccttacatcaagaaagggtt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tcacatgctgagctgcctaagattctcctgtccatcgcagccttacatcaagaaagggtt 346
Query: 419 ttctgcttcattcaatcaagagtgcatttttggctatattagcacagcgtcatgaaaaat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttctgcttcattcaatcaagagtgcatttttggctatattagcacagcgtcatgaaaaat 286
Query: 479 tccaatcataatttctgatgcttattcaaatcacaaactttcaacatcaaagaaacagga 538
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 285 tccaatcataatttctgatgcttattcaaatcataaactttcaacatcaaagaaacagga 226
Query: 539 atgataaaacatactagttaatgtccacacacacacacacacacacacacacacacacac 598
||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 225 atgataaaacatactagttaatgtc------------cacacacacacacacacacacgc 178
Query: 599 acacacacgagtcctgagagtaacccaaaaaatctagacaaggaaataacttctcattaa 658
| | | ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gcgcgcgcgaatcctgagagtaacccaaaaaatctagacaaggaaataacttctcattaa 118
Query: 659 ggctggaagagttttgagaaactganatacacgctggctac 699
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 117 ggctggaagagttttgagaaactgaaatacacgctggctac 77
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1101
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1091
Effective search space: 751699
Effective search space used: 751699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no272_f05.g1 MSMg01no272_f05.g1 CHROMAT_FILE:
MSMg01no272_f05.g1 PHD_FILE: MSMg01no272_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:27 2005
(292 letters)
>mm_chr3_82953735_82954426
Length = 692
Score = 549 bits (284), Expect = e-161
Identities = 290/292 (99%)
Strand = Plus / Plus
Query: 1 ctgcagatagtggtctcagcctggctttcaccaggttggagcatgtactacccaagggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ctgcagatagtggtctcagcctggctttcaccaggttggagcatgtactacagaagggcc 260
Query: 61 tctgtgcactggattcatgcctttatttgaatccatgtactcttgtcctaacaaatgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtgcactggattcatgcctttatttgaatccatgtactcttgtcctaacaaatgatg 320
Query: 121 ggattagatgtggtcctgagtaatacatcccaatcctgaggaaaaccaatttaagatatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggattagatgtggtcctgagtaatacatcccaatcctgaggaaaaccaatttaagatatg 380
Query: 181 gctccattaaatccaaaacatgaggctaattcattcctttaagaccccagcacattcagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctccattaaatccaaaacatgaggctaattcattcctttaagaccccagcacattcagc 440
Query: 241 ttatcagctaaacgaatctactttttatattgctctctgaggattaatttat 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatcagctaaacgaatctactttttatattgctctctgaggattaatttat 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
