BAC Information

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BAC

Clone NameMSMg01-273D18
Chromosome3 (Build37)
Map Location 96,155,135 - 96,155,450
singlet/doubletsinglet
Overlap genenone
Upstream geneSetdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1
Downstream genePafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273D18.T7 (MSMg01no273_d18.b1)MSMg01-273D18.TJ (MSMg01no273_d18.g1)
ACCAG412294AG412295
length729729
length of high quality
(start - end)
321 (42 - 362)292 (438 - 729)
definitionCHROMAT_FILE: MSMg01no273_d18.b1 PHD_FILE: MSMg01no273_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:34 2005CHROMAT_FILE: MSMg01no273_d18.g1 PHD_FILE: MSMg01no273_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:34 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTACCATTGAACCACCAATGCTCCCATAGACGAGGTTTGTGACAACACTT
TAGGAAAAGGTAAGAGAGCCCTGCCTCTACTGAAAAGTAATCCGGTAAAT
CAGTGAATCTTCACGGTGTTCAGGATTTTCCAGGATTGATAAGGAAATGC
CCTCCTACGCTAGGCTGTGAAAGGGCCAAGTCCTCTCACCTGACTCAATC
TGAATCAGATTTGCTGCTAAAGAAGTTTCCGAGCATGGCCTGCAGAATTC
CTTCTATGTCTCCTGGCCACCATCTGTGGAGTTTCAGCCTATTAAAAGGA
AAATGCTAGCTTCTTTTCATTCTCGCTGCTNCCCCAGCCTTCCTTGTGCT
TTACCAGTGCCCAAAGCACGCTCAATTCAGAAGAAAACAAATCCACATAG
GTCCTGGAAACAAGTGCACAACAACACCCCATCTGTGTGACACAGATGGC
ATAACCCTTCTCTGAGGGGCTGCACATCCCACTCCCTCTAGTTTGGACAG
GAAGAAGCTAGAGGTGGGAAGAAAAGCCGGCCATTGTTCCCCAGGTTTGT
GAGTTGTTTACTTTGCAGGGCAGGTGGTCTCCTAACGCACTACAGCTGCT
CTTCTGGGATGTTGCATAGCAACGGCTGGGAAAAGTAGCTAGTANACTAA
CTGAGTACCATCTGTGTTGGAAACCCAGC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGGTAAATCTAATAGAGGACGTTGACAG
ATCTCACAATGATTAATAAGATTATTCACCAATGGGTTCCCTGCAGCCTG
GAATCCCATTGCCTTCCTTGTTGCCTAAGGAATGGTCTATCATAGTGATT
GATCTAAAAGATTATTTTTTCACAATTCCTCTACATGAACACAATAAGGA
GAGGTTTGCTTTCTTAGTACCTACCTTTAATAGACGTTGTCCAATAAAAA
GATATCATTGGAAAGTCCTACCATAAGGAATGTTAAATAGTCCCACCTTA
TGCCAATATTTTGTTCCCTTTACCCATGCTATTCCGCAAATGGATGTGTT
CCATTTTACAGAGTTTGGTAAACTGAAATAAAAGAACCACACTATAGACG
CATATCTAGGATTTCAATGGGCAACCGCCTTAGCTCCAGAAAAGGCTGAT
TCTGTCATTAAACATTTATTAGACGTTATGGCCATTATGGGAATACCCAC
ACAAATTAAAGTGGACAGAGGTCTGGCATATGTCTCTAATAGGATGAAGC
AGTTTTCTATATAATATAAAACATGTTACAGGCATACCACACAATCCTAC
AGGACAAGCAATCGAGGAGAGATCTAATCACACTGTAAAGGAGATGCTTA
ACAGGCAGAGGGGCAACAAAACCCCAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_d18.b1 MSMg01no273_d18.b1 CHROMAT_FILE:
MSMg01no273_d18.b1 PHD_FILE: MSMg01no273_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:34 2005
         (321 letters)



>mm_chr3_96154931_96155650
          Length = 720

 Score =  536 bits (277), Expect = e-157
 Identities = 307/317 (96%), Gaps = 1/317 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaccattgaaccaccaatgctcccatagacgaggtttgtgacaacactttagga 64
           ||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 205 gaattctaccattgaactaccaatgctcccgtagatgaggtttgtgacaacactttagga 264

                                                                       
Query: 65  aaaggtaagagagccctgcctctactgaaaagtaatccggtaaatcagtgaatcttcacg 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaggtaagagagccatgcctctactgaaaagtaatccggtaaatcagtgaatcttcacg 324

                                                                       
Query: 125 gtgttcaggattttccaggattgataaggaaatgccctcctacgctaggctgtgaaaggg 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgttcaggattttctaggattgataaggaaatgccctcctacgctaggctgtgaaaggg 384

                                                                       
Query: 185 ccaagtcctctcacctgactcaatctgaatcagatttgctgctaaagaagtttccgagca 244
           |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 385 ccaagtcctctcacctgactcagtctgaatcagatttgctgctgaagaagtttccgagca 444

                                                                       
Query: 245 tggcctgcagaattccttctatgtctcctggccaccatctgtggagtttcagcctattaa 304
           ||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct: 445 tggcctgcagaattccttctatgtctcctggccacgatcgg-ggagtttcagcctattaa 503

                            
Query: 305 aaggaaaatgctagctt 321
           |||||||||||||||||
Sbjct: 504 aaggaaaatgctagctt 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space:   221832
Effective search space used:   221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)