BAC Information

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BAC

Clone NameMSMg01-273F06
Chromosome3 (Build37)
Map Location 8,682,484 - 8,682,608
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620822, LOC633072, LOC545500, LOC620966, Stmn2, Hey1
Downstream geneLOC100039504, Mrps28, Tpd52, LOC100041389, LOC667886, Zbtb10, Zfp704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273F06.T7 (MSMg01no273_f06.b1)MSMg01-273F06.TJ (MSMg01no273_f06.g1)
ACCAG412360AG412361
length819773
length of high quality
(start - end)
173 (41 - 213)---
definitionCHROMAT_FILE: MSMg01no273_f06.b1 PHD_FILE: MSMg01no273_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:41 2005CHROMAT_FILE: MSMg01no273_f06.g1 PHD_FILE: MSMg01no273_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGGAACCATCCCAGTTTGATTCCCTGTAGGTAGCATCCCTGAATCTGTGT
GAGTCTGACTCTTGCTGCCCTCAGCACAGTACTAGGTTCTGAAATTAGGT
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTCCACC
CCTCCTCTCTTTACTTGGATACCTCATACATCATCACTGTGTTACTAAGC
TGTCTGTGACAACTTATCCCTTTAATTCCATCAGACTCACTTCGATCTCT
GTGGCTTCACTATCACCTTTTTTTTTTTCTCCATTTTGTTCTTATAAAGA
AAAATTTTGGGATAGATTCCCGAAACAAAACCCCCTTTTTTTATTTTTTT
GTGATTTTTTTTTTGTGTNNTTTAAAAAAAAGAGTAAAAAAATCTGTCGG
CGGGGGTGTGGCCCAACTCTACTTATTTTTTCCCCTTTTCTCTTTCTCCT
TCCTACCTTTTCTTTCACTTTTCCACTTTCACCCTTTTACCTTCTTTCTA
TTGCTTTCTCCCTTTCTTAACACCCTTTCCCCCTCCTTCCTTTTACTCCT
TTTTCCCTTTATTCTCCACCATCTTCCTCCCCATTTAACCTCTTTTTCCC
TATTTTCCTTCCCCTCCTCCTTTTTCTTCCTCATTTTTTCATCCCACTTT
TTTCCTTTCTATCCGCATACTCTTTTTTTCTCTTACTACTTCTCTTTTTT
TTTCTCATACCTAAAACTAACTCTTTATATCCACTTCTATTCTCTCCCTT
CTTTTCCCCACCCTTTTCT
CCCGGGATNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCNNNNNNNNNNN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANGTTCTGGTCTCTGTCTCT
CCCTAACTCANANCGCANTTTCCTGTTCCTAANTTATGCTTTCAACTCTT
ATTAAATGNCCCCATANCTACCCTGNTTTTTGGAAAATGAATCTTTAAAA
GCAAACCCCCTTTAAAAAAAAAAGGCTGCCCCCCCTAAAANTATCTGAGA
TCTGTTCTTTNNNCTCCCAATTCCTTTTCAAAATACCTTTTTCCAAAAAA
TTTAACTTTTTCCCCAAAAAAAAAAAAAAACTTTTTTTTCTCCTTTACAA
AAAAATTTTCCCCCCCCCCCCAAAAAAATTTATATTTTTTCCCCCCCCCC
CCCCCCCCCTNTTTTTAAATATTTTTTTTATTCCCCCACATCTTTTAATT
TCCCCCCAATAATTTTTTCTTAACAAAAAAATTTTTTTCTTTTGGAAAAA
AAAACCCTTTTTTNCNCNCNTTTTTAAATAANNNNNNAAATTTTTTTATC
TCCAATTTAAATAAAAANAANNNNNNNNNNNAAAAAACTTTTCTAATAGG
CTCTNTGGGGGGGGTCTTNNNNNNNNNNTTNCNNNNTCTTNNNNNNTTTA
NANTCCTNTTTCCTTCTTCTCCCCTTTTTCTTCTTTTTTCCTATTCCCAC
AAATTTGCAGTGGTGGGTGGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_f06.b1 MSMg01no273_f06.b1 CHROMAT_FILE:
MSMg01no273_f06.b1 PHD_FILE: MSMg01no273_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:41 2005
         (173 letters)



>mm_chr3_8682299_8682871
          Length = 573

 Score =  234 bits (121), Expect = 2e-66
 Identities = 124/125 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctggaaccatcccagtttgattccctgtaggtagcatccctgaatctgtgtgagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gaattctggaaccatcccagtttgattccctgtaggtagcatccctgaatctgtgtgagt 251

                                                                       
Query: 65  ctgactcttgctgccctcagcacagtactaggttctgaaattaggttgtgtgtgtgtgtg 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctgactcttgctgccttcagcacagtactaggttctgaaattaggttgtgtgtgtgtgtg 191

                
Query: 125 tgtgt 129
           |||||
Sbjct: 190 tgtgt 186


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)